Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0565 ATGATGTATTTTCTTTTGAAACAAAAGTGCTCCCTTGCCGATGAAGTACTCGTTGCTTTGCTGCTTCGATTTCTCTTCTTCCGGCGTCAATTTTTGGTGTTGATTCCGGCCAGTTACTGCTTCTTCTTGGTCGATTTCCAGAGATTAACCATGATTAATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGTGCTTCGTCTCTTGGGGTTCTCACTTCCGTCCTGTCCTCGGCAGCCGGTGTTTATGGCCTTACGCTTCACCCGCTTCTTATCGTTACTACTCTTGTCTTCCTCCTTGTTTTCATTTTTAATATAATTGGTGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGGTACTGCTGCTTTCTATGCTGCCGGCGTTGTTCCAACCTCTCTCTTCGCCATGGCTATCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCCCTGGCGATCAAGGAGGTGATGCCTATACAATACAAACACATGCTTGGTGGACCTTCTTTAAAAGTTGACATTCATTCTGGAGCTACAGCTGAAGGAATTTTGACCTTTATAATCAGTTTTGCTGTTCTTCTAATTGTAGTCAGGGGTCCTTCCAGCCCAATTATTAAAACATTGTTGCTGGCAATGACCACCGTAGCGTTAATTGTTGCTGGTTCTAGTTACACAGGACCTTCCATGAATCCTGCAAATGCGTTCGGATGGGCATATATAAACAACAGGCATGATACATGGGAGCAGTTGTACGTATACTGGATCGCCCCCTTCATAGGAGCGATTTTGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCCCCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 882 47.05 MMYFLLKQKCSLADEVLVALLLRFLFFRRQFLVLIPASYCFFLVDFQRLTMINAIKAAIGDAVLTSMWIFCASSLGVLTSVLSSAAGVYGLTLHPLLIVTTLVFLLVFIFNIIGAALGGASFNPTGTAAFYAAGVVPTSLFAMAIRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGILTFIISFAVLLIVVRGPSSPIIKTLLLAMTTVALIVAGSSYTGPSMNPANAFGWAYINNRHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPPPAPAKQKKA 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18985130 18990970 - ClG42_04g0056500.10 Clacu04g0565 246962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0565 293 SUPERFAMILY Aquaporin-like 47 289 IPR023271 -
Clacu04g0565 293 Gene3D Glycerol uptake facilitator protein. 47 285 IPR023271 -
Clacu04g0565 293 PRINTS Major intrinsic protein family signature 142 161 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0565 293 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0565 293 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0565 293 PRINTS Major intrinsic protein family signature 103 127 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0565 293 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0565 293 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0565 293 PANTHER AQUAPORIN SIP1-1 51 292 IPR044222 GO:0015250(InterPro)
Clacu04g0565 293 FunFam Aquaporin SIP1-1 52 292 - -
Clacu04g0565 293 Pfam Major intrinsic protein 50 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0565 Clacu-Chr4:18985130 Clacu04g0945 Clacu-Chr4:23687465 1.10E-11 dispersed
Clacu04g0565 Clacu-Chr4:18985130 Clacu02g2170 Clacu-Chr2:34829824 2.10E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0565 K09875 - csv:101220534 399.053