Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0627 ATGGCTTCAAGACAAGTTCTTCCCCAACAAATCAGAGGCGAGGCAGCGATCGGTGGAGGAAAACAGGCAAAGGGCGCAGCGGCGGCAGATGCTAGGAACCGCCGAGCATTGGGTGATATTGGGAATCTGGTAACTGTTCGAGGAGTTGACGCAAAGGCAAATCGTCCTATTACAAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCCCAAGCTGCTGCAAAAGCTGAAAACAATAAGAAACAAGTACCTGTTAATGTAGATGGGGCTGCTCCCATTCTTGATGCTGGTGTTATGGCTGTTAAGAAAGCAGGAGCTCCCAAGCCAGCACATAAGAAAGTTGCAATTAAACCAACATCGGAGGTTATCGAGATAAGCTCGGACACGGTCGAAAAAGTTAAAGCCAAGGAAGTCAAATGTGCAAACAAGAAAAAGGAAGGAGAAGGGCCCTCAAAGAAGAAAGCACAGACTCTCACTTCAGTCCTAACTGCTAGAAGCAAGGCTGCCTGTGGTGTATCCAAGAAACCTAAAGAGGAGATTTTTGATATTGATGCTGCAGATGTTGGTAATGAGTTGGCAGCAGTTGAATATGTTGAGGACATTTACACTTTCTATAAAGAAGCCGAGAATGAGAGCAGACCTCATGACTATATGGATTCACAACCTGAGATAAACTCGACCATGAGGGCTATTTTGGTGGATTGGTTGGTTGATGTCCACAACAAATTCGAACTTTCGCCCGAAACTTTCTACCTCACGATCAATATAATCGATCGATTCCTTGCGACAAAAATAGTTCCAAGAAGGGAATTGCAATTGGTGGGCATTGGAGCCATGCTTATAGCCTCCAAATATGAAGAAATTTGGGCGCCTGAGGTAAATGACTTTGTGTGTCTTTCGGATAGAGCTTACACTCATGAACAGATACTAGTGATGGAGAAAAAAATACTTGGCAAGTTGGAATGGACCTTGACTGTTCCTACACCCTACGTTTTCCTTGCTCGATTCATCAAGGCGTCCAAGGACTCCAATCACGAGATGGAAAATCTGGTTTATTTTCTGGCTGAACTTGGTATAATGCATTACAATACGGCAATGATGTATTGCCCGTCCATGATTGCCGCCTCGGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACCCCTGCTTGGGATGACACCCTCAAACTGCACACTGGTTTCTCAGAACCTCAGATAATTGACTGTGCAAAACTTCTGGTGGGGTTCCATGGGGTAGCAGAGAAGAACAAGCTTCAAGTAATATACCGAAAGTACTCGAGCTCCGAGCGGGGAGCGGTAGCATTGCTTCAGCCAGCCAAAGCTCTGTTGGCTCCCAATGGTGGCGGTGTCCATTGA 1374 46.0 MASRQVLPQQIRGEAAIGGGKQAKGAAAADARNRRALGDIGNLVTVRGVDAKANRPITRSFCAQLLANAQAAAKAENNKKQVPVNVDGAAPILDAGVMAVKKAGAPKPAHKKVAIKPTSEVIEISSDTVEKVKAKEVKCANKKKEGEGPSKKKAQTLTSVLTARSKAACGVSKKPKEEIFDIDAADVGNELAAVEYVEDIYTFYKEAENESRPHDYMDSQPEINSTMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKIVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKKILGKLEWTLTVPTPYVFLARFIKASKDSNHEMENLVYFLAELGIMHYNTAMMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQIIDCAKLLVGFHGVAEKNKLQVIYRKYSSSERGAVALLQPAKALLAPNGGGVH 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19855548 19857829 + ClG42_04g0062700.10 Clacu04g0627 247024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0627 457 SMART cyclin_7 233 317 IPR013763 -
Clacu04g0627 457 SMART cyclin_7 330 414 IPR013763 -
Clacu04g0627 457 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Clacu04g0627 457 FunFam G2/mitotic-specific cyclin-1 314 440 - -
Clacu04g0627 457 SUPERFAMILY Cyclin-like 188 323 IPR036915 -
Clacu04g0627 457 Pfam Cyclin, C-terminal domain 326 444 IPR004367 -
Clacu04g0627 457 ProSitePatterns Cyclins signature. 228 259 IPR048258 -
Clacu04g0627 457 CDD CYCLIN_AtCycB-like_rpt1 176 321 - -
Clacu04g0627 457 Pfam Cyclin, N-terminal domain 199 323 IPR006671 -
Clacu04g0627 457 SUPERFAMILY Cyclin-like 327 447 IPR036915 -
Clacu04g0627 457 Gene3D - 199 440 - -
Clacu04g0627 457 Gene3D - 213 324 - -
Clacu04g0627 457 PANTHER CYCLINS 175 432 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu04g0627 457 SMART Cyclin_C_2 326 445 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2308 Clacu-Chr2:36185997 Clacu04g0627 Clacu-Chr4:19855548 8.20E-111 dispersed
Clacu04g0627 Clacu-Chr4:19855548 Clacu11g2051 Clacu-Chr11:31446050 2.00E-68 dispersed
Clacu04g0627 Clacu-Chr4:19855548 Clacu05g1869 Clacu-Chr5:27892746 1.90E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0627 K21777 - csv:101217210 751.895