Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g0659 | ATGGAGAAGTACGAGAAGCTCGAAAAGGTCGGCGAAGGAACTTACGGGAAGGTCTACAAGGCCAAAGACAAGGAGACTGGCCAACTCGTTGCTCTCAAGAAAACTCGCCTTGAAATGGACGAAGAAGGCGTACCGCCGACGGCACTTCGTGAGGTTTCTCTTCTTCAATTGCTTTCTCAGTCTCTCTATGTCGTTCGTCTCCTCTGCGTTGAGCATGTTCACCACCATAAAAGTGGTAAGCCTCTTCTCTACCTTGTATTCGAGTATCTCGACACTGATCTCAAGAAGTACATCGATTCGCATCGTAAGGGCCCCAATCCTAGGCCTCTTCCTTCCACTCTTGTTCAGAGTTTCCTGTTTCAGCTCTGTAAGGGCGTTGCGCATTGTCATAGTCATGGCGTTCTTCACCGTGATCTCAAGCCGCAGAATCTACTTCTGGATCAAGGTAAAGGTGTTTTGAAGATTGCTGATCTTGGTCTTGGACGTGCTTTTACTGTCCCTCTTAAGAGCTACACTCATGAAATTGTTACTCTCTGGTATCGTGCTCCTGAGGTTCTCCTTGGTTCCACTCATTACTCCACTGCTGTCGATATGTGGTCTGTTGGTTGCATCTTCGCTGAAATGGTGAGGAGGCAGGCTTTGTTCCCCGGAGATTCTGAGTTCCAGCAGTTGCTCCACATTTTTAGGCTGCTAGGTACTCCCACCGAGAAACAGTGGCCTGGAGTTAGTTCTTTGAGGGATTGGCATGTCTATCCTCAATGGGAACCTCAGAATCTGACACGTGCAGTTCCATCCTTGGAACCCGAGGGTGTTGACCTTCTCTCGAAAATGCTTCAATATAATCCAGCAGACAGAATCTCAGCGAAAGCAGCTCTAGACCATCCCTATTTTGACAGCCTCGACAAGTCTCAGTATTAA | 918 | 48.04 | MEKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKYIDSHRKGPNPRPLPSTLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQGKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVSSLRDWHVYPQWEPQNLTRAVPSLEPEGVDLLSKMLQYNPADRISAKAALDHPYFDSLDKSQY | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 20414290 | 20417590 | + | ClG42_04g0065900.10 | Clacu04g0659 | 247056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g0659 | 305 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524(InterPro) | |
Clacu04g0659 | 305 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 134 | 146 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu04g0659 | 305 | FunFam | Cyclin-dependent kinase B2,2 | 1 | 91 | - | - | |
Clacu04g0659 | 305 | PANTHER | CELL DIVISION PROTEIN KINASE | 3 | 297 | IPR050108 | GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER) | |
Clacu04g0659 | 305 | SMART | serkin_6 | 4 | 297 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu04g0659 | 305 | FunFam | Cyclin-dependent kinase 2 | 93 | 304 | - | - | |
Clacu04g0659 | 305 | ProSiteProfiles | Protein kinase domain profile. | 4 | 297 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu04g0659 | 305 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 91 | - | - | |
Clacu04g0659 | 305 | Pfam | Protein kinase domain | 4 | 297 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu04g0659 | 305 | Gene3D | Transferase(Phosphotransferase) domain 1 | 92 | 305 | - | - | |
Clacu04g0659 | 305 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 300 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g0659 | Clacu-Chr4:20414290 | Clacu11g2083 | Clacu-Chr11:31652544 | 3.00E-121 | dispersed | |
Clacu04g0659 | Clacu-Chr4:20414290 | Clacu02g1673 | Clacu-Chr2:30168315 | 1.50E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73488 | PF00069 | Pkinase | 7.30E-67 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g0659 | K07760 | - | csv:101204557 | 605.905 |