Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0666 ATGTTATGGTTAAATTTTTCGTATGTTGTTGTATTGATTGTCAAGAATATTATGGCGATTAGGGTTAGGCCATTCAGCCGAATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTAGTAGTTCAAGAAGGTTTGGAATGTTATCTGCCTCGAATATTATTCAGGCTCCGCTTTCTGCGCTGTTAGAGTATTCGGGTCTTCTTCGCGGCCGCCCAAGTCATCAAGAATCTGAGGCATTGATAAGTGCGCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACTAATGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTTAGTGGTCAGAATGCGGTGTCTTTGCAATCTGTTTCGGGGTTGGCATCTGTGACCTTGGGGTCGGATCTTAGCCAGGGCAATTCTGCTACTGAACGCGGTGCAAGAGAGGGCATTCCTCAATCGATAAATGGAAATGCTGATGGAGATGCCTCGGAGGCGGCTGGGGGAAATAGCAGGGATTCTTCTTATCAGAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTCCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGTTTCTTTGTGACAATATGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGGGGAGAGAAAAATCTCTGTTTTGGTTGGCATTTCTCTTGCATTCACTATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCATTGATCATGCTTCCCCCAAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCAGTGATGGTGATCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGTTAACTTTAGTCGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCCGTTTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGCCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACCTCTGTTGTCGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGCGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACGTGCCCATTGTGTAGGGCTTTGGTTAAACCCGCGGATCTCAGGTCATTTGGTGATGGATCAACAACTGCTACTTTGGAGGAAGCAAAGGCTGGCGCTCGTGAACTCGGAAAGGGGAATTCGAAATCGACATGTATACATAAATAG 1554 45.43 MLWLNFSYVVVLIVKNIMAIRVRPFSRMEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTTATLEEAKAGARELGKGNSKSTCIHK 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20550057 20557718 - ClG42_04g0066600.10 Clacu04g0666 247063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0666 517 SMART ring_2 437 474 IPR001841 -
Clacu04g0666 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 485 IPR013083 -
Clacu04g0666 517 ProSitePatterns Zinc finger RING-type signature. 452 461 IPR017907 -
Clacu04g0666 517 ProSiteProfiles Zinc finger RING-type profile. 437 475 IPR001841 -
Clacu04g0666 517 CDD RING-HC_RNFT1-like 435 475 - -
Clacu04g0666 517 MobiDBLite consensus disorder prediction 164 202 - -
Clacu04g0666 517 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 34 494 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
Clacu04g0666 517 Pfam Ring finger domain 436 475 IPR001841 -
Clacu04g0666 517 SUPERFAMILY RING/U-box 432 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0666 Clacu-Chr4:20550057 Clacu07g0546 Clacu-Chr7:7177438 4.60E-154 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0666 - - - 0.0