Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0672 ATGCCTTTTCTCTCTTTCTCGTCGCTTTCCCCTTCCATCGTTTACCCCCTTCTTCAAATTCACTCTCTTCGTCTTCTTCTTCTTCTTCTTCTTTACCTTCCATTTTTCTTCTACCCCATCTTCAAATTCACTCTCTTCTTCGTCTTCTTCTTATTTACAAACAGGGTTTCTGACGAACTCTTCAATTTCGACTTCATTCTGCTTCTTTCTCCCACAGGTATTGCCTGTTTGCGGTTTGATTCTTTCAATTCGATGGATTTTGTTGATGGGTTTTGTGTTGAATTTCTAGAATGTGATTGGGTTTTTATGCCGTCTATGTGGAGGGATTGTGTTTGCCTTTTTCTGCTGTTGTGTTGTCGCTCCATGCTTCTTGCTGGTGCTGCTACCACAGAGCCATCTGATGTTAAAGCATTGCTAGCAGTAAAGAGGAGTCTAATTGATCCTATGGACCAGCTTATCAGTTGGACTAAGGGAGATCCTTGCACAGATAATTGGATTGGAGTAGTATGCAGCTATTCTGATGGAGCTGTCAGGAACTTACGTGTCAAAGAACTCCAGCTATTGTACATGGACCTATCTGGAAAGTTAGCCCCTGAGATCAGCCAACTGTCCGTGCTTGAGAAGTTAAATTTCATGTGGAATAACCTAACTGGTTCAATTCCAAAGGAGATTGGCAGTATTTTGTCGCTGAAACTTTTACTCCTAAATGGAAATAAACTATCTGGTTCTCTTCCGGATGAGCTTGGTAATCTTACAAATCTCAACCGGTTCCAAGTAGATCAGAATCAAATTTCTGGGCCTATCCCAAAATCATATGCCAACTTGATCCGTGTGAAGCACCTCCACTTCAATAACAACACACTAAGTGGTGAAATTCCATCTGAGCTTTCCAAATTACCCAAGCTTATTCACTTGCTTTTGGATAACAATAACTTGTCGGGTTCGCTGCCACCAGAATTTTCGACCTTGCCAATGCTACACATTCTGCAACTTGATAATAACAACTTCGAAGGTGAAATTCCGGCATCTTATGAAAATTTTCCTAAATTAGTGAAATTAAGTCTGAGGAATTGTGGCTTGGAGGGACCGATTCCTAATTTTAGCAAGATAGCAAACCTCAGTTACTTAGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCTTATAACCTCTCTTGTAGGATGACAACAATAATTTTGTCGAACAACCAGCTGAATGGATCTATACCCAGAAGTTTCTCCAATCTTCCTATCCTCCAGAAACTGTCACTTGAGAATAATTTTCTGAATGGTTCTGTACCTTCTGCTCTATGGGAGACAATGTCCTTCGAATCAAGTGCTCGACTTACACTCGATCTTCGGAACAATTCGTTCTTTGACATTTCTGGAAGCACAAACCCTCCTGCTAATGTCACCCTAAGGCTTGGAGGAAATCCAATCTGCCAAAATTTGAGCGGACAAAACTCTGACCAGTTCTGTACATTCAAAATGGTAGTGGATGGGCTTCATACAAGCTCAAGGAATTCCAGTAAAACATGTCCGGTTAGCAGTTGTCCAACGGACAGTTTCTTTGAATTAGTGCCAGACACTCCTGACCCATGCTTTTGTGCATCACCCCTTGGGATTGGATATAGGCTGAAGAGTCCAAGTTTTTCCTACTTTCCTCCATACATGCATTTATTTGAAGTGTATCTGACAAAGGAACTCGGTTTGAATAAGCACCAATTGTTAATCGATTCATACGATTGGGAAGGAGCTCGCCTGAGGATGTATCTGAAGCTTTTTCCATCATTTGATAGTGGCACTCATAAATTGGATATAACTGAGATATTTCTCATTACAGAACAATTTATGTCATGGAATTTTACCCCAAATGACGTGTTTGGCCCATACGAGCTTCTCAACTTCACACTCCCTGACCGTTTTCAGACTGTCATTTTCGAGACAGAGAAGATGGGCATTAGTACAGGCATCCTGGCAGCCATTATAGTTGGATCTGTTTTTTGTGTTCTTTTGATTGTAGCAGTAACCGTACTTCTAGTCACTAGGCATTCTAGATACCATCAGGTTTTGTCAAGGAAAAATCTCTCTTCAACGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAAGAAGTGCAATTGGCTACTGGAAATTTCAACCGCTCAACTCAAGTTGGCCGAGGTGGTTATGGCAGGGTCTATAAAGGCATACTATCAGATAATTCAGTTGTAGCCATCAAGCGTGCAGAAGAAGGATCTTTACAAGGCCAAAAAGAATTTTTGACGGAGATAAAACTCTTATCACGATTGCATCACCGAAACTTAGTATCCCTAATTGGATATTGTGATGAAGAAGGGGAACAAATGCTGGTTTACGAGTTTATGCCGAATGGAACTTTGCGGGACTGGCTTTCTGGTTTTGAGTTTTCTGACAAAAGTAACACTACAGTAAATCTGAATTTTCGTATGAGACTACAAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCACACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTCCTCGATGCCAAGTTCACGGCCAAAGTGGCTGATTTTGGATTGTCACGTCTTGCTCCTGATCTGGATTTCGAGGGGGATGTTCCTGGACATATATCTACTGTCGTGAAGGGTACCCCTGGTTATCTTGATCCAGAGTACTTCTTAACCCGTAAACTGACAGACAAAAGTGATGTCTATAGCTTAGGAGTTGTGTTCTTGGAGCTCTTGACGGGTATGCACCCTATTTCGCATGGCAAAAACATCGTTCGTGAGGTAAAATTGGCACATCAAATGGGAACAATTCTTTCAATTGTAGACACCAGTTTGGGTTCTTTCGCATCTGAGTGTTTAGAGAGGTTTGTCGCTTTGGCCCTCAGTTGTTGCCATGACCATCCAGAAGAGCGGCCGTCAATGCTGGTTGTGGTGAGGGAGCTGGAGAACATACTAAACATGATGCCCGACGATAGCGGCACCTTGTATTCAGACTTGTCCACAAGATCAAGTGCCAGGCTTCCATCCTCACCGACATCAACGTCCTGCATCACCCGGGACCAGTTTGCATCAGGAAGCATTTCGGGGAGCGATCTCATCAGTGATGTCATGCCAACCATCAGACCTCGATGA 3186 42.22 MPFLSFSSLSPSIVYPLLQIHSLRLLLLLLLYLPFFFYPIFKFTLFFVFFLFTNRVSDELFNFDFILLLSPTGIACLRFDSFNSMDFVDGFCVEFLECDWVFMPSMWRDCVCLFLLLCCRSMLLAGAATTEPSDVKALLAVKRSLIDPMDQLISWTKGDPCTDNWIGVVCSYSDGAVRNLRVKELQLLYMDLSGKLAPEISQLSVLEKLNFMWNNLTGSIPKEIGSILSLKLLLLNGNKLSGSLPDELGNLTNLNRFQVDQNQISGPIPKSYANLIRVKHLHFNNNTLSGEIPSELSKLPKLIHLLLDNNNLSGSLPPEFSTLPMLHILQLDNNNFEGEIPASYENFPKLVKLSLRNCGLEGPIPNFSKIANLSYLDLSWNHFTGPIPPYNLSCRMTTIILSNNQLNGSIPRSFSNLPILQKLSLENNFLNGSVPSALWETMSFESSARLTLDLRNNSFFDISGSTNPPANVTLRLGGNPICQNLSGQNSDQFCTFKMVVDGLHTSSRNSSKTCPVSSCPTDSFFELVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYMHLFEVYLTKELGLNKHQLLIDSYDWEGARLRMYLKLFPSFDSGTHKLDITEIFLITEQFMSWNFTPNDVFGPYELLNFTLPDRFQTVIFETEKMGISTGILAAIIVGSVFCVLLIVAVTVLLVTRHSRYHQVLSRKNLSSTIGLKIDGVKAFSFKEVQLATGNFNRSTQVGRGGYGRVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIKLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDWLSGFEFSDKSNTTVNLNFRMRLQIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKFTAKVADFGLSRLAPDLDFEGDVPGHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVKLAHQMGTILSIVDTSLGSFASECLERFVALALSCCHDHPEERPSMLVVVRELENILNMMPDDSGTLYSDLSTRSSARLPSSPTSTSCITRDQFASGSISGSDLISDVMPTIRPR 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20638022 20648706 - ClG42_04g0067200.10 Clacu04g0672 247069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0672 1061 SUPERFAMILY L domain-like 151 488 - -
Clacu04g0672 1061 FunFam Leucine-rich repeat protein kinase family protein 687 798 - -
Clacu04g0672 1061 Pfam Protein kinase domain 724 995 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0672 1061 SMART serkin_6 723 1006 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0672 1061 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 247 339 - -
Clacu04g0672 1061 Pfam Leucine Rich Repeat 301 323 IPR001611 GO:0005515(InterPro)
Clacu04g0672 1061 Pfam Leucine Rich Repeat 397 417 IPR001611 GO:0005515(InterPro)
Clacu04g0672 1061 Pfam Leucine Rich Repeat 229 251 IPR001611 GO:0005515(InterPro)
Clacu04g0672 1061 Pfam Leucine Rich Repeat 372 389 IPR001611 GO:0005515(InterPro)
Clacu04g0672 1061 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Clacu04g0672 1061 Gene3D Ribonuclease Inhibitor 131 392 IPR032675 -
Clacu04g0672 1061 SUPERFAMILY Protein kinase-like (PK-like) 708 1030 IPR011009 -
Clacu04g0672 1061 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 799 1014 - -
Clacu04g0672 1061 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0672 1061 ProSiteProfiles Protein kinase domain profile. 723 1003 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0672 1061 FunFam Leucine-rich repeat receptor-like kinase 133 246 - -
Clacu04g0672 1061 Pfam Leucine rich repeat N-terminal domain 132 171 IPR013210 -
Clacu04g0672 1061 ProSitePatterns Protein kinases ATP-binding region signature. 729 751 IPR017441 GO:0005524(InterPro)
Clacu04g0672 1061 Gene3D Transferase(Phosphotransferase) domain 1 799 1015 - -
Clacu04g0672 1061 Gene3D Ribonuclease Inhibitor 393 482 IPR032675 -
Clacu04g0672 1061 Gene3D Phosphorylase Kinase; domain 1 694 798 - -
Clacu04g0672 1061 PANTHER RECEPTOR-LIKE PROTEIN 55 152 1000 - -
Clacu04g0672 1061 CDD STKc_IRAK 729 1002 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0003 Clacu-Chr3:258187 Clacu04g0672 Clacu-Chr4:20638022 3.40E-187 dispersed
Clacu04g0672 Clacu-Chr4:20638022 Clacu10g1313 Clacu-Chr10:26166444 8.40E-94 dispersed
Clacu10g2252 Clacu-Chr10:35437174 Clacu04g0672 Clacu-Chr4:20638022 3.90E-93 wgd
Clacu11g0675 Clacu-Chr11:6517974 Clacu04g0672 Clacu-Chr4:20638022 6.30E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73489 PF00069 Pkinase 6.00E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0672 - - - 0.0