Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0680 ATGAGGCTACAATCCCTTTTTGCAGCATCATCTTTACTCTTACTCATATATTTTCTCTCCTTCATTGCGGCTGATCTAAACTCAGACCGGCAAGCTCTTCTGGAGTTTATTTCAACAGTTCCCCATGGTCGGAAAATTAACTGGGATCCATCTACCCCTGTCTGCACTACATGGGTTGGCGTCACTTGTACTTCAGACCTCTCTAATGTGCTTGCTCTCAGGCTGCCTGCTGTTGGACTGTATGGTCCGATCCCGGCCAATACACTTGGAAAGTTAGATGCCCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAATCTTCCATCAGATGTGCTATCCCTTCCCTCCCTAAAGTTTATATATCTTCAACACAATAACTTTTCTGGTAAAATACCTTCTTCCCTGTCGCCTAGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACTGGAAACATTCCGAAATCAATACAAAATTTAACGCACCTCACTGGCCTAAACGTCCAAAACAACTCCCTGACTGGATCCATTCCTGATATAGGTCACCTAAAGCTTAAGCAATTGAACTTGAGCTACAACCATCTCAGCGGTCCCATTCCTGCTTCACTGCAATCATTTCCTACTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCGCCACTTAAAAATTGCTCAGTTGGTGCCCCCTTACCTTCTCCATCTCCTGTTTCTTTGCCCCCACCAAAGAAAAAGAGCAAAAAGAAAATAAATATTGGAGCTATTGTTGCCATCGCCCTAGGTGGTGCTGCCGTGCTCTTCCTCCTCATGTTATTGATTGTTGTCTGCTGTATGAAGCGAAAAGATGGTGAAGGTAGTGCTGCTGCTGTGAAAGGAAAGGGTAAAAGGACTGAGCAACCGAAGGAGGATTTCGGAAGCGGGGTACAAGAGCCTGAGAAAAACAGGCTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGATCTTGAGGACTTGTTAAGGGCGTCTGCTGAAGTGCTCGGAAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGAGGAAGGAGTAACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTGGCTGGGAAAAAGGAATTTGATCAACAAATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTGCCTCTCCGTGCCTATTACTATTCAAAAGATGAGAAGCTTTTGGTTTACGACTATGCCGTTGCTGGAAGCTTTTCAGCATTACTCCGTGGAAGCCGAGAAGGTGGACGAGCGCCACCGGACTGGGAAACAAGATTGAAGGTTTCCTTGGGGTGTGCCAAAGGGCTTGCACATATCCATTCAGCAAGTGGGGGGAAATTCATCCATGGCAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGCATTTCAGATTTTGGCCTGACTCCTCTGATGAACTCCCCTGCCATTCCCTCTAGAAGTGTAGGTTATCGTGCTCCAGAGGTGATCGAGACTCGAAAATCAACTCAAAAGTCAGATGTTTACAGTTTTGGAGTTGTTTTGCTAGAGATGTTGACTGGGAAAGCACCATCCCAATCGCCCGGCCGCGACGATGTTATGGACCTTCCGAGATGGGTCCAGTCTGTGGTAAGAGAGGAATGGACATCTGAGGTGTTTGATGTAGAGTTAATGAAGTATCAGAACATTGAAGAAGAGCTTGTTCAAATGCTCCAAATAGCAATGGCTTGCGTGTCTCGAGTGCCAGATATGAGACCAACGATGGAAGAAGTAGTTAGGATGATCGAGGAAATCCGACAATTAGACTCAGGAACTCGACCATCATCAGAAGATAACAAAGCTGGGGACGGGGACGATGACTTGAATACTCAGACCTTCTCTTTCCTGCCGATCCTGATCTTCATCCCCTCGTCGATCGCAAACCCTTTTGATTTCTCAAGGTTTTTCTCTCATTTTCCGCCTTTTCTTGCGTTCTGTGTTGATCATGGCTTCGAAGCGTATCTTGAAGGAACTCAAGGATTTACAGAAGGATCCACCCACATCTTGCAGTGCTGGTTTTTGTGGAGAATGACCCAATCCTCAAACGCAAATGAAAACTATTCTTCTGGGATGTCACAGAGCACTATCACGATAGGCCCTGTAGCTGAAGATATGTTCCATTGGCAAGCGACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTTGTCAATATTCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTTGCTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGACATCCTTAAAGAACAGTGGAGCCCTGCGCTTACGATTTCCAAGCTAGTTTTGTCATGTTTGAGATCTATATGCTTCTGCCATAGTAAAGTTCTGTGTAGCATGGATGCTTACTTGATCGAAGTACCCTATTTGATGGAGAATCTTACAACACTCGATCTGATTATTTCTTTGAGCCATGGTTTCCCTATGCAATTAGGAGTTCTATTTTCTGTGAAGAATTTGGGTCTCGGGCCCAACTCCTTGCATTATACTTATGGCCCACACCCTACTAATCCCAGGATGGGAAGCCATTCCACGGGGAACTTGCATGCTCATCAACTTTTTGTTGATTTATGTTCTAGAAATGTTAAGGTACTGCTTTCCATATGCTCATTGCTGACTGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCGCACATCTTGATGTTGATGATGGATGATGCTAGTGGTGGTATCTTTGGCATGGCATCCTTCTGTATTACCTCGTTTCTTCCAGTTATTTGGGCTGTGTAG 2868 44.74 MRLQSLFAASSLLLLIYFLSFIAADLNSDRQALLEFISTVPHGRKINWDPSTPVCTTWVGVTCTSDLSNVLALRLPAVGLYGPIPANTLGKLDALRTLSLRSNNLNGNLPSDVLSLPSLKFIYLQHNNFSGKIPSSLSPSLTFLDLSFNSLTGNIPKSIQNLTHLTGLNVQNNSLTGSIPDIGHLKLKQLNLSYNHLSGPIPASLQSFPTSSFEGNSLLCGSPLKNCSVGAPLPSPSPVSLPPPKKKSKKKINIGAIVAIALGGAAVLFLLMLLIVVCCMKRKDGEGSAAAVKGKGKRTEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGVTVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDYAVAGSFSALLRGSREGGRAPPDWETRLKVSLGCAKGLAHIHSASGGKFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSVGYRAPEVIETRKSTQKSDVYSFGVVLLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRQLDSGTRPSSEDNKAGDGDDDLNTQTFSFLPILIFIPSSIANPFDFSRFFSHFPPFLAFCVDHGFEAYLEGTQGFTEGSTHILQCWFLWRMTQSSNANENYSSGMSQSTITIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLVLSCLRSICFCHSKVLCSMDAYLIEVPYLMENLTTLDLIISLSHGFPMQLGVLFSVKNLGLGPNSLHYTYGPHPTNPRMGSHSTGNLHAHQLFVDLCSRNVKVLLSICSLLTDPNPDDPLVPEIAHILMLMMDDASGGIFGMASFCITSFLPVIWAV 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20751540 20758034 + ClG42_04g0068000.10 Clacu04g0680 247077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0680 955 PANTHER OS05G0588300 PROTEIN 12 618 IPR050994 -
Clacu04g0680 955 MobiDBLite consensus disorder prediction 289 310 - -
Clacu04g0680 955 SUPERFAMILY UBC-like 715 803 IPR016135 -
Clacu04g0680 955 Gene3D Transferase(Phosphotransferase) domain 1 413 627 - -
Clacu04g0680 955 FunFam Ubiquitin-conjugating enzyme E2 D2 709 819 - -
Clacu04g0680 955 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Clacu04g0680 955 SUPERFAMILY Protein kinase-like (PK-like) 339 604 IPR011009 -
Clacu04g0680 955 Gene3D Phosphorylase Kinase; domain 1 303 410 - -
Clacu04g0680 955 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Clacu04g0680 955 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Clacu04g0680 955 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Clacu04g0680 955 Pfam Leucine Rich Repeat 95 114 IPR001611 GO:0005515(InterPro)
Clacu04g0680 955 Gene3D Ubiquitin Conjugating Enzyme 702 814 IPR016135 -
Clacu04g0680 955 FunFam pollen receptor-like kinase 1 303 410 - -
Clacu04g0680 955 ProSitePatterns Protein kinases ATP-binding region signature. 341 372 IPR017441 GO:0005524(InterPro)
Clacu04g0680 955 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 770 785 IPR023313 -
Clacu04g0680 955 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Clacu04g0680 955 Pfam Ubiquitin-conjugating enzyme 713 803 IPR000608 -
Clacu04g0680 955 CDD STKc_IRAK 341 606 - -
Clacu04g0680 955 ProSiteProfiles Protein kinase domain profile. 335 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0680 955 CDD UBCc 715 801 IPR000608 -
Clacu04g0680 955 SMART ubc_7 702 833 - -
Clacu04g0680 955 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 696 843 IPR000608 -
Clacu04g0680 955 SUPERFAMILY L domain-like 39 225 - -
Clacu04g0680 955 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 411 617 - -
Clacu04g0680 955 FunFam Probable inactive receptor kinase RLK902 26 182 - -
Clacu04g0680 955 Gene3D Ribonuclease Inhibitor 185 228 IPR032675 -
Clacu04g0680 955 Gene3D Ubiquitin Conjugating Enzyme 893 933 IPR016135 -
Clacu04g0680 955 Pfam Protein kinase domain 339 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1944 Clacu-Chr2:32996160 Clacu04g0680 Clacu-Chr4:20751540 3.70E-182 dispersed
Clacu04g0680 Clacu-Chr4:20751540 Clacu11g0407 Clacu-Chr11:3813284 3.20E-137 dispersed
Clacu07g1691 Clacu-Chr7:31652740 Clacu04g0680 Clacu-Chr4:20751540 3.80E-51 dispersed
Clacu04g0680 Clacu-Chr4:20751540 Clacu01g0206 Clacu-Chr1:2017868 3.60E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73490 PF00069 Pkinase 1.60E-37 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0680 - - - 0.0