Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0683 ATGAAGGAAATTCATAAATCCCGTCTTGCATTTGCATTTGCTTCTATCTCTGTTTTCGTTTGCTTGTTCTTCGATGTCCATGTGGTTTTAGCAGACAATTACATCCCTCGGGATTTCATCCTCCTTGATTGTGGAGGGCCTTCAACTGCTAACGACATCGATGGCCGGAAATGGTATACCGATGACAAATCTAAGTTTGTTCCGGCGACAGGGAATAGCATCGTATCGAAAGCCGCTACTCAGGATCCTTCAGTTCCTGATATCCCTTTCATGACGGCTAGGGTTTTCAGTTCTAATTTCACCTACAGCTTTCCTGTGGCTCCTAGTCGTTTATTCGTTCGTCTCTACTTTTATCCTTCTTCTTATGGTGGACTTAATGCATCTGATGCTCTTTTCTCTGTTTCCACTCCGTCCTATACTCTTCTTAAGAACTTCAGCGCTTCACAAACTGCTGAGGCTTTGAATTATGCCTATATCATTAAGGAATACTCTATCCATGTTGATGGTGATAGGTTAAACTTGACTTTCATTCCATCCTCCAGTCATCCAAAGGCTTATGCATTTGTGAACGGGATTGAGATTGTATCTATGGCTGATATTTACAGTGATACTTCTGGGAGTACTCTGATTGTTGGCCCATCTACTCCATTCACTGTGGACAATGCCACTGCGCTTGAGAATGTTTATCGGTTGAATGTCGGGGGGAATGATATTTCACCTTCTGGTGATACGGGGATGTATAGGTCTTGGTTTGATGACACTCCATACTTGTATGGTGCAGCACAGGGAGTGACGATGAGTACTGATCAGAACACAACGCTTAATTATCTGCCGAATATTCCTACTTATGTTGCGCCGGAAAATGTCTACTCCACTGCTAGAGCAATGGGACCTGATAACAATGTCAATCTGAATTATAACTTGACATGGATTTTCCCTGTTGACACTGGGTTCTTTTATCTTGTTAGGCTCCATTTTTGTGAGGTTGCTGCAAATATCACAAAAATTAACCAAAGAGTTTTCGACATTTTCCTCTTTAATCAAACTGCTATGCAGGGTGCTGACGTGATTGCCTGGGCTGGAAGTAATGATACTCCTGTGTACAAAGATTATGTGGTTTTCGTTCCTGCTAATGGAAGTCCGCAGCAGGATTTATGGCTCGAACTCCATCCAGACAAGTCCATGGTCCCCAATTACTATGATGCAATCTTGAATGGTGTGGAGATATTCAAAATTAATGACTCGAGCGCTAATCTTGCTGGGCCAAATCCTATTCCTGCGCCAGTACAGAAAATTATTGATCCATCATTAGCTAAGCCAGCATCTTCTCATGGTAAATCAAAGAAGTCAGGGGTGATTGCTGGAGTTGTTTGTGGAGCAGTTGTTTTAGCTCTGATCATTGGTTTCTTTGTTGTTGCTAAACGTCGCCATGGGCATGGGAAAGATTCAAGTACTGTTGAAGGACCGTCAGGATGGCTACCTCTTTCTCTCTATGGAAATTCCCATTCGGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACATCCTCCCTGCCTTCCAATCTTTGCCGCCACTTCTCGTTTTCTGAGATCAAGGCTGCCACAAGGGACTTTGATGAATCTTTACTACTTGGAGTTGGTGGTTTTGGCAAAGTTTACAAGGGAGAAATTGATGGTGGGACTACAAAAGTTGCCATCAAGCGAGGGAACCCTCTTTCCGAGCAAGGTGTGCATGAATTTCAAACTGAGATTGAAATGCTCTCTAAGCTTCGCCATCGCCACCTTGTTTCATTGATTGGCTACTGTGAAGAGAATTGTGAAATGATCCTGGTTTATGATTACATGGCTCATGGAACACTGCGAGAACATCTATACAAGACTCACAAGCCACCGTTGTCTTGGAGGCAAAGGCTCGAGATATGCATTGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAGTATACGATTATTCATCGAGATGTGAAGACAACCAACATCCTTTTGGACGAAAAGTGGGTAGCAAAAGTATCTGATTTCGGGTTGTCGAAAACTGGTCCTACTTTGGATCACACACATGTTAGCACTGTTGTGAAAGGTAGTTTTGGATACTTGGATCCTGAATACTTTAGGCGACAGCAATTGACCGACAAATCAGATGTTTACTCCTTCGGAGTCGTTCTCTTTGAAGTCCTATGTGCTCGGCCAGCCTTGAACCCAACACTCCCCAAGGAGCAAGTGAGTTTAGCCGAATGGGCTGCACACTGCTACAACAAAGGCATTTTAAATCAGATAATCGACACATTCCTAAAGGGGAAGATCGCATCGGAGTGTCTCAAGAAGTTCGCCGAGACAGCAATGAAATGTGTGTCTGATCAGGGCATCGACAGGCCATCAATGGGCGATGTTCTCTGGAATCTAGAGTTTGCATTGCAGCTGCAGGAGAGCGCAGAAGAGAGTGGCAAGGTAGGCAGTGGGATAGAAGTGGAAGGAGGTCAGCTCGACGTAGTTTACAAAGGGAAGAAGGATCCAGACGCTTCCCCTGGCATCGATGGAAACATAACCGACTCAAGAAGCACCGGAATCAGTATGAGCATTGGAAGCCGGAGTCTTGCCAGTGAAGATTCGGACGGGTTGACGCCAAGTGCCGTCTTCTCACAGATTATGAACCCAAAAGGTCGTTAA 2694 44.54 MKEIHKSRLAFAFASISVFVCLFFDVHVVLADNYIPRDFILLDCGGPSTANDIDGRKWYTDDKSKFVPATGNSIVSKAATQDPSVPDIPFMTARVFSSNFTYSFPVAPSRLFVRLYFYPSSYGGLNASDALFSVSTPSYTLLKNFSASQTAEALNYAYIIKEYSIHVDGDRLNLTFIPSSSHPKAYAFVNGIEIVSMADIYSDTSGSTLIVGPSTPFTVDNATALENVYRLNVGGNDISPSGDTGMYRSWFDDTPYLYGAAQGVTMSTDQNTTLNYLPNIPTYVAPENVYSTARAMGPDNNVNLNYNLTWIFPVDTGFFYLVRLHFCEVAANITKINQRVFDIFLFNQTAMQGADVIAWAGSNDTPVYKDYVVFVPANGSPQQDLWLELHPDKSMVPNYYDAILNGVEIFKINDSSANLAGPNPIPAPVQKIIDPSLAKPASSHGKSKKSGVIAGVVCGAVVLALIIGFFVVAKRRHGHGKDSSTVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKAATRDFDESLLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTHKPPLSWRQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYNKGILNQIIDTFLKGKIASECLKKFAETAMKCVSDQGIDRPSMGDVLWNLEFALQLQESAEESGKVGSGIEVEGGQLDVVYKGKKDPDASPGIDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20783621 20786314 - ClG42_04g0068300.10 Clacu04g0683 247080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0683 897 FunFam FERONIA receptor-like kinase 223 413 - -
Clacu04g0683 897 MobiDBLite consensus disorder prediction 843 897 - -
Clacu04g0683 897 SMART serkin_6 539 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0683 897 ProSitePatterns Protein kinases ATP-binding region signature. 545 568 IPR017441 GO:0005524(InterPro)
Clacu04g0683 897 Pfam Protein tyrosine and serine/threonine kinase 545 807 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0683 897 FunFam FERONIA receptor-like kinase 39 198 - -
Clacu04g0683 897 Gene3D Phosphorylase Kinase; domain 1 524 615 - -
Clacu04g0683 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0683 897 Gene3D Transferase(Phosphotransferase) domain 1 616 829 - -
Clacu04g0683 897 FunFam Receptor-like protein kinase FERONIA 616 826 - -
Clacu04g0683 897 SUPERFAMILY Protein kinase-like (PK-like) 512 812 IPR011009 -
Clacu04g0683 897 Pfam Malectin-like domain 42 412 IPR024788 -
Clacu04g0683 897 CDD STKc_IRAK 545 811 - -
Clacu04g0683 897 PANTHER OS03G0124300 PROTEIN-RELATED 16 476 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Clacu04g0683 897 MobiDBLite consensus disorder prediction 855 890 - -
Clacu04g0683 897 ProSiteProfiles Protein kinase domain profile. 539 813 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0683 897 Gene3D - 39 198 - -
Clacu04g0683 897 Gene3D - 224 413 - -
Clacu04g0683 897 FunFam Receptor-like protein kinase FERONIA 511 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0683 Clacu-Chr4:20783621 Clacu07g1602 Clacu-Chr7:30606458 6.00E-218 dispersed
Clacu11g0844 Clacu-Chr11:8476224 Clacu04g0683 Clacu-Chr4:20783621 5.90E-42 dispersed
Clacu02g1719 Clacu-Chr2:30657171 Clacu04g0683 Clacu-Chr4:20783621 4.90E-238 transposed
Clacu10g2251 Clacu-Chr10:35413049 Clacu04g0683 Clacu-Chr4:20783621 1.20E-61 wgd
Clacu03g0003 Clacu-Chr3:258187 Clacu04g0683 Clacu-Chr4:20783621 4.90E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73491 PF12819 Malectin_like 4.80E-40 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0683 - - - 0.0