Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0695 ATGGCACAATCAATTGGATATGCTGAAACAGATCCATCTGGTCGCTATGGACGGTTTAGAGAAATTCTAGGCAAAGGAGCCATGAAAACAGTATATAAAGGGTTTGATGAGATGCTTGGAATTGAAGTAGCTTGGAATCAAATCCACCTCAAAGATGTCTTCCATTCCCCTCAAGAACTACAACGTCTATACTCAGAAATTCATCTCCTCAAGAACCTTGACCACGACTCGATCATCCGGTTCTACACTTCTTGGATCGATACTCATTGCCGAACCTTCAATTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAGTATCGAAACGTCAATATCGAAGCAATCAAGAATTGGGCTCGTCAAATCCTACAAGGTCTGGCTTATCTTCATGGTCATGATCCACCTGTAATCCATAGAGACCTCAAGTGTGATAACGTATTTATCAACGGCCATCTCGGACTAGTTAAAATCGGTGATCTAGGACTTGCGACAATCCTTCATGATTCTAAATATGCCTATAGCGTCATAGGTACACCAGAATTCATGGCACCAGAGCTTTATGATGAGGAATATAATGAACTTGTGGATGTTTATTCTTTTGGGATGTGTATGATTGAGATGCTTACTTTGGAGTATCCTTATAGCGAGTGCTCTAACCCTGCTCAGATATATAAGAAAGTCACTTCAGGAAAATTGCCTAATGCATTCTATGAGATCAAAGATTTGGAGGCCCAAAGATTTGTAAGAAAATGTTTGGAGAATGTTTCAAAGAGGCTGCCTGCTAGAGAGCTCTTGCTTGATCCATTTCTAGCACCTAATTCCAACAATAACAATGCCTCTTATAATGAAGACTTACTGTCTTCATCTCTATCTCCAAAGAAATCAATGGCAAGAAGAACGCACATGGTTATTTCTGGATCAATGAATCCCAAGGACGATTCGGTTTTTCTAAAAGTGCATATCAAAGTGAATAACGGTAAATCTAAGAATGTATATTTTGCATTCGACACCAAAAACGACACCGCAATCGACGTTGCGACTGAGATGGTTAAAGAAGTAGAAATTATTAGTGATTGGGATCCATTGGAGATAGCTGTGATGATAAAGAAGGAGATATTCACATTGATTCCAGATTGGGAGGAATGGAAGTTACCCAAAAACCACCATCAAGATAGCTTCACCTATGAACAAGACCACAAGGACGACGACGACAATGATGATGACGACGAAAACCATGAAATACCACATCCTTTTTATTATTGTTGCTCCTCTCCTGCCTCCTCCTCAAATTCTCTTTGGGGTTTCTACTCTTTAAAAGAGAGCATCAATCATCATTTTGGAGGAATGAAGGAAACTTCTACTACCACTGAATGGTTCCAAGAGGATGTTCTCAATAATATTGATGATGATACAAGTTCTAGTTGCTCTCTCAATTCCTTCAATTACTCTGATATAAGCTTTTACTCAAACAATGAAGATGAGTATGAATATGAATCAAATGTCAAAGGAAGTGAGCCTCAGTACATCTCAACAGCCAAGCAACCTACAAGATTTTGCCCAACCATGAAGATAGACACACACCCTTTGAGGCAAAAGGACACCAAAAAAATGATCGATCGAGAAATATTTGAGAGTCGATCTCGATTAAATAACTCGCATAAGCTCATGAGAGTGAAATCAATGGTGAACCTCCGTAGCGAGACGTTGCATCGGTCTTTAGTAGAGATGTTGTTGAAGAAGCGCTTGTTCAATACGGTGGGTGCAATGGAGAACATTGGATACCAAAAACCATAG 1809 39.86 MAQSIGYAETDPSGRYGRFREILGKGAMKTVYKGFDEMLGIEVAWNQIHLKDVFHSPQELQRLYSEIHLLKNLDHDSIIRFYTSWIDTHCRTFNFITEMFTSGTLREYRQKYRNVNIEAIKNWARQILQGLAYLHGHDPPVIHRDLKCDNVFINGHLGLVKIGDLGLATILHDSKYAYSVIGTPEFMAPELYDEEYNELVDVYSFGMCMIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYEIKDLEAQRFVRKCLENVSKRLPARELLLDPFLAPNSNNNNASYNEDLLSSSLSPKKSMARRTHMVISGSMNPKDDSVFLKVHIKVNNGKSKNVYFAFDTKNDTAIDVATEMVKEVEIISDWDPLEIAVMIKKEIFTLIPDWEEWKLPKNHHQDSFTYEQDHKDDDDNDDDDENHEIPHPFYYCCSSPASSSNSLWGFYSLKESINHHFGGMKETSTTTEWFQEDVLNNIDDDTSSSCSLNSFNYSDISFYSNNEDEYEYESNVKGSEPQYISTAKQPTRFCPTMKIDTHPLRQKDTKKMIDREIFESRSRLNNSHKLMRVKSMVNLRSETLHRSLVEMLLKKRLFNTVGAMENIGYQKP 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20930292 20936595 + ClG42_04g0069500.10 Clacu04g0695 247092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0695 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 597 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Clacu04g0695 602 SUPERFAMILY Protein kinase-like (PK-like) 19 446 IPR011009 -
Clacu04g0695 602 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Clacu04g0695 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0695 602 CDD STKc_WNK 15 275 - -
Clacu04g0695 602 FunFam Probable serine/threonine-protein kinase WNK1 2 98 - -
Clacu04g0695 602 SMART serkin_6 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0695 602 FunFam probable serine/threonine-protein kinase WNK9 100 281 - -
Clacu04g0695 602 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0695 602 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Clacu04g0695 602 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1954 Clacu-Chr2:33112920 Clacu04g0695 Clacu-Chr4:20930292 2.50E-157 dispersed
Clacu04g0695 Clacu-Chr4:20930292 Clacu06g0607 Clacu-Chr6:7007267 9.50E-119 dispersed
Clacu04g0695 Clacu-Chr4:20930292 Clacu03g0309 Clacu-Chr3:3611049 7.30E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73494 PF00069 Pkinase 1.10E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0695 K08867 - csv:101207665 983.786