Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0698 ATGGCGGTTTCTCCCCACTCTTTTCCGCCGAGGAAACGGCGGCCGTCCGCCGCCGCTTTCGTCTCTCCCAAACTCTCCGTCCCAATCCTCCTCGAATCCCTTCTCTCTCTCTCCCAAGAAATCTCCGGCATGAAACCACTCCAATTCCTCCTCAACCGTTACTCCAATTCCATGATTCGCAAATCAAGATTGCTTGAGATTTTCCTCGACGACCTCCGCCGCAACCGGATCGTTTCGCTCTCCGCCTCCGCCTCCCTCTGTCTCGAAGAAATGTACATCGTTTTACAGAGAATCAAGACGTTGATTGAAGATTGTTCTAACGGAAGTAAGATGTGGTTACTCACACAGAATGAATCCATCGCCAATAATTTCCACGAACTCACTTTGGATTTATCGACTCTGCTCGATATCTTCCCTGTCAAAGACGCTGAATTAACCGAAGACGTTGAAGAATTGTTTTACCTCTTGAGAAATCAGTGCTCTGAATCCGCCGCTTTCCTCGATCCAAGAGATGAAACTCTCCGATTCAGATTATTGAAGATGATCGATCGAATCAAAGACGAAATCGTTCCGGATTATTCCGAATTGTCAGAGATTTTCTCCAGGATTGATATTCGCGATTCGTCGAGTTGTAGAGAGGAAATCGAGAATCTGGAAGATGAGATTCAGAATCAAACGGATGAGAAATCGAGATCGGACGTGATTGCGTTGATCGGATTAGTTCGTTACGCGAAATGCGTTTTATATGGAGCATCGACGGCGGAATATGGTTTCCGGCGGAAAGATTCGATTTCCGATTTGCCTGTACCGGCGGATTTCAGATGTCCGATTAGTTTGGATTTAATGCAAGACCCTGTTGTCGTGGCAACAGGACATACGTACGATCGTGCGGCGATAACTCTGTGGATTGAATCTGGGCATAACACGTGTCCGAAGACAGGTCAGACTCTGGCCCACACGAACCTAATTCCGAACCGAGCATTGAAAAATTTGATTGCGATGTGGTGCCGTCAAGAGAGAATTCCGTTTGATGTAACGGAAAGTAATAAAGAGAGAGTCAACGACGTCACGTTAAATAAAGCGGCGTTAGAAGCAATGAGAATGACGGCAACGTTTCTCGTTAACAAACTCGCCACGTCAGCTAATTCTTCCGTGAACGACGTCGTGTACGAGCTTCGTGTTTTGGCTAAAACAGATTCCGGCAGCCGTGGATATATCGCTCAAGCCGGAGCTCTGCCGTTACTCGTCCGATATCTCAACTCCGACAACCCGATTCTCCAAGTGAACGCCGTCACCACGGTGCTCAACCTCTCGATTTTCGAAGCCAACAAATCGCTGATAATGGAAACCGACGGCGCGCTGATCGGAGTGATCGAGGTACTCCGGTCCGGCGCTACCTGGGAAGCGAAAGGTAACGCCGCTGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACCGGCGGAGATTGGGAAGGAAGACACGTGTCATAAAGGGATTGCTTGATTTGGCTAAAGACGGGCCGATTAATTCGAAGAGGGATGCTCTGGTTACCATTTTGACATTAGCCGGCGATAGGGAGACCGTCGGGAGATTAATCGAAGGTGGGATTATGGAGACGGTAAGTCATCTGATGAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTGAGAAAAGGGGGATTTGTGGCGATTGCTTCGGGATTTTATCTGATTAAGAAATTGGGGGCGGTGTTGAGAGAAGGCTCCGATAGGGCCAGAGAAAGCGCCGCCGCGGCGCTGGTGACAATGTGCCGGCAAGGTGGGTCGGAGATGGTGACGGAGTTGGCGTCGATGGCCGGGATTGAGAGAGTCATTTGGGAACAGATGGGGAGTGGGACAATTAGAGGGCGGCGGAAGGCAGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGTTTGGATGTAATAGGTGGTGCCGGAGGAGATTCCTTAACGGTTACTTCGTCGAGAATCGGCGGCAACTCAACCACCATTGTTAGTTCGTCAAGAGGAGCAACTGTGCATAGCTAG 2064 50.05 MAVSPHSFPPRKRRPSAAAFVSPKLSVPILLESLLSLSQEISGMKPLQFLLNRYSNSMIRKSRLLEIFLDDLRRNRIVSLSASASLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNESIANNFHELTLDLSTLLDIFPVKDAELTEDVEELFYLLRNQCSESAAFLDPRDETLRFRLLKMIDRIKDEIVPDYSELSEIFSRIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIALIGLVRYAKCVLYGASTAEYGFRRKDSISDLPVPADFRCPISLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDVTESNKERVNDVTLNKAALEAMRMTATFLVNKLATSANSSVNDVVYELRVLAKTDSGSRGYIAQAGALPLLVRYLNSDNPILQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRLGRKTRVIKGLLDLAKDGPINSKRDALVTILTLAGDRETVGRLIEGGIMETVSHLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGAVLREGSDRARESAAAALVTMCRQGGSEMVTELASMAGIERVIWEQMGSGTIRGRRKAASLLRILRRWAAGLDVIGGAGGDSLTVTSSRIGGNSTTIVSSSRGATVHS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20999604 21001667 - ClG42_04g0069800.10 Clacu04g0698 247095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0698 687 CDD RING-Ubox_PUB 270 322 IPR045210 -
Clacu04g0698 687 Gene3D - 370 647 IPR011989 -
Clacu04g0698 687 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Clacu04g0698 687 SMART Ubox_2 272 335 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu04g0698 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515(InterPro)
Clacu04g0698 687 SUPERFAMILY RING/U-box 260 341 - -
Clacu04g0698 687 PANTHER U BOX DOMAIN-CONTAINING 52 648 - -
Clacu04g0698 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 350 IPR013083 -
Clacu04g0698 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu04g0698 687 Coils Coil 208 235 - -
Clacu04g0698 687 SUPERFAMILY ARM repeat 372 644 IPR016024 -
Clacu04g0698 687 Gene3D - 54 141 IPR036537 GO:0007166(InterPro)
Clacu04g0698 687 Pfam Armadillo/beta-catenin-like repeat 403 438 IPR000225 GO:0005515(InterPro)
Clacu04g0698 687 Pfam U-box domain 269 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0698 Clacu-Chr4:20999604 Clacu11g0750 Clacu-Chr11:7341749 3.10E-97 dispersed
Clacu04g0698 Clacu-Chr4:20999604 Clacu03g0744 Clacu-Chr3:8247712 2.30E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0698 - - - 0.0