Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g0699 | ATGCCGGCGTTCGACGACAATCCTCCGCCGGGGGGACTCACCCGCGGCGACTCCTTGCCTGAGGGAATTCTCTTCGGCAAGTACGAACTCGGTAAGCTTCTCGGATGTGGAGCTTTCGCTAAGGTCTATCATGGCAGAAACGTTGTTACAGGACAGAGCGTTGCGATTAAAGCTGTTAACAAACTCAAGGTTCTGAAAGGGGGTTTCACGGCGCACGTTAAGAGAGAAATCGCTATCATGCGCCGACTCCGTCATCCCAACGTCGTTCGTCTCTTTGAAGTTCTCGCCACTAAGACCAAGATTTATTTCGTTATGGAGTTCGCAAAAGGAGGAGAACTGTTTGCCAAAGTTTCTAAAGGAAGATTCAGTGAGAATCTCAGCCGTCGGTACTTTCAGCAATTGATTACCGCCGTTGGATACTGTCATTCCAGAGGAATTTTTCATCGCGATTTGAAACCAGAAAATCTCCTTCTCGATGATAATTTCGATCTCAGAGTTTCGGATTTTGGACTTAGTGCTCTTACAGATCAGATTCGTCCTGACGGATTACTTCACACGCTTTGTGGAACTCCGGCCTACGTCGCACCGGAGATTCTCGCTAAAAAAGGCTACGACGGCGCTAAAATCGATGTCTGGTCTTGCGGTATAATCCTCTATGTTCTTACAACTGGATACCTTCCTTTCAACGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGTTGCCCGAAGTGGACATCTCCAGATCTACGGCGGTTTCTCTCGAGGCTTCTCGATACGAATCCTGAGACGAGGATTACCGTGGATGAGATTTATCGAGATCCGTGGTTTGTGAAGGGATTTCAGGAGGAGAAATTTCAACAACTTGAAGATTCTCCTTCTGAGCTTTACGGTGATGTGAACAATGCGAAATGTTTGACTGCTTTTGATCTTATTTCTTTCTCACCTGGTTTCGATTTGACTGGACTGATCAATGAGACGGAATTTTCTTCTGGCGTTGAGAGGTTTCTCTCCGCTGAGTCGCCTGAGAAGATCATTGTGACGGTTGAGGAGATTACGAAGTCGGAGAATGCGGTTGTGGAAAAGAACGGCTGGGGAGCTAAAGTGGAAGGAATGGACGGCGGATTCGTCGCCGTGATCGATATTTTCCGGCTGACGGAGGAATTGGTGGTTGTTGAGATTAAAAACAGAGTGAGGGAAATAGATCAAGATCGTCAAATTTGGAAAGATATATTGAGACCTCAACTTGAGAGTTTAATCTACCGGTCGGATTGA | 1290 | 46.51 | MPAFDDNPPPGGLTRGDSLPEGILFGKYELGKLLGCGAFAKVYHGRNVVTGQSVAIKAVNKLKVLKGGFTAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFAKVSKGRFSENLSRRYFQQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTTGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIYRDPWFVKGFQEEKFQQLEDSPSELYGDVNNAKCLTAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVTVEEITKSENAVVEKNGWGAKVEGMDGGFVAVIDIFRLTEELVVVEIKNRVREIDQDRQIWKDILRPQLESLIYRSD | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 21034220 | 21035509 | + | ClG42_04g0069900.10 | Clacu04g0699 | 247096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g0699 | 429 | Gene3D | Kinase associated domain 1, KA1 | 312 | 427 | - | - | |
Clacu04g0699 | 429 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 146 | 158 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu04g0699 | 429 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 19 | 401 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Clacu04g0699 | 429 | FunFam | Non-specific serine/threonine protein kinase | 20 | 305 | - | - | |
Clacu04g0699 | 429 | Pfam | Protein kinase domain | 28 | 282 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu04g0699 | 429 | Gene3D | Transferase(Phosphotransferase) domain 1 | 22 | 311 | - | - | |
Clacu04g0699 | 429 | CDD | CIPK_C | 312 | 421 | - | - | |
Clacu04g0699 | 429 | SUPERFAMILY | Protein kinase-like (PK-like) | 24 | 303 | IPR011009 | - | |
Clacu04g0699 | 429 | ProSiteProfiles | Protein kinase domain profile. | 28 | 282 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu04g0699 | 429 | SMART | serkin_6 | 28 | 282 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu04g0699 | 429 | Pfam | NAF domain | 309 | 367 | IPR004041 | GO:0007165(InterPro) | |
Clacu04g0699 | 429 | FunFam | Aurora kinase A | 22 | 111 | - | - | |
Clacu04g0699 | 429 | ProSitePatterns | Protein kinases ATP-binding region signature. | 34 | 57 | IPR017441 | GO:0005524(InterPro) | |
Clacu04g0699 | 429 | ProSiteProfiles | NAF domain profile. | 306 | 330 | IPR018451 | GO:0007165(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1957 | Clacu-Chr2:33133370 | Clacu04g0699 | Clacu-Chr4:21034220 | 1.90E-142 | dispersed | |
Clacu04g0699 | Clacu-Chr4:21034220 | Clacu06g1315 | Clacu-Chr6:24121893 | 9.80E-118 | dispersed | |
Clacu04g0699 | Clacu-Chr4:21034220 | Clacu04g0701 | Clacu-Chr4:21130902 | 2.90E-114 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73495 | PF00069 | Pkinase | 2.40E-70 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g0699 | - | - | - | 0.0 |