Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0726 ATGACGTCTGAGAATTCTAGTGGAGAAAAGATATCAAGAAAGAGGCGAAATGGGTATGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAGTTGAACAATCAATTGGAGGATTTGGCAAAAGATGGAGTAGAAGAAATTCGTAGAGTTCCAGCCAAGGGCTCTAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCTCAGAATTCAGATTGTAATTTCAGAGGTGTTAGACAGAGGACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCAATTGCTAGTAATAATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGCACTTTTGCCACTGCTCATCAGGCTGCTCTTGCTTATGATGAAGCTGCTAAAGCCATGTATGGCCCTTTTGCCCGTCTCAATTTTCCTGATTCTTCATCTTCTCCTCTGAAACCAGTAATAGTAGAGCATTCTGATTCGATATCCCCAGTTGCTTCTTCCTCCTCGTCTTCTTCCATTTTCAATGGACTATCTGCAGAGAAAATGAACTGCTGTTATTCAATGGATAAGCAAGAGAATTGTGGGTATGAATCAATGGAGGAACTGAAGGTGAAAGTGGAAGAAACAGCAAGAAATAGAGTCAATTATACAGATGCTACATTTTATGATTCTAACATTGGTAACAGATTAACAGAAGGGAATATCAAGGAAGGATTAGCTGATGTTGTAAGAAGTCGTGATATTAATAGAGATAGCCATGATCAGAATGACCCTTCTGAGCTTTGTTTCAAATTTGAAGCTATGGATACAAATGGCTGCAATGACTTAAACGAATGCAATCAATATGTGCTACAGAAATTTCAAAGTGATCCATATGCAAGAACTTACTGGATTCCGGCTGAGTGGGAGATCGGCGATCTTGGGTCCGCGCCGGTGATGGAAGGAAAGCCAATGGAGATAGAGAGCTATGGAGATTGTAGGGCCTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGACCAAAGAGTTGATGATTGTAACTTCGAGTTTTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAACGCAAGTGGCTTGATTTATGGTTCCGTGGATGA 1125 41.96 MTSENSSGEKISRKRRNGYVSVVDTLNKWKKLNNQLEDLAKDGVEEIRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASNNTRVKKKGSRLWLGTFATAHQAALAYDEAAKAMYGPFARLNFPDSSSSPLKPVIVEHSDSISPVASSSSSSSIFNGLSAEKMNCCYSMDKQENCGYESMEELKVKVEETARNRVNYTDATFYDSNIGNRLTEGNIKEGLADVVRSRDINRDSHDQNDPSELCFKFEAMDTNGCNDLNECNQYVLQKFQSDPYARTYWIPAEWEIGDLGSAPVMEGKPMEIESYGDCRAFNRDLSLLLDRQKHMGVGDQRVDDCNFEFLRPDYDFGLEEERKWLDLWFRG 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21492084 21493376 + ClG42_04g0072600.10 Clacu04g0726 247123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0726 374 SUPERFAMILY DNA-binding domain 72 140 IPR016177 GO:0003677(InterPro)
Clacu04g0726 374 CDD AP2 71 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0726 374 Gene3D AP2/ERF domain 72 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0726 374 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 283 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Clacu04g0726 374 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0726 374 SMART rav1_2 72 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0726 374 FunFam Ethylene-responsive transcription factor 2 71 139 - -
Clacu04g0726 374 Coils Coil 194 214 - -
Clacu04g0726 374 Pfam AP2 domain 72 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0726 374 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0726 374 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1160 Clacu-Chr2:22983629 Clacu04g0726 Clacu-Chr4:21492084 7.10E-40 dispersed
Clacu04g0726 Clacu-Chr4:21492084 Clacu05g2032 Clacu-Chr5:29294067 1.60E-28 dispersed
Clacu11g0745 Clacu-Chr11:7286009 Clacu04g0726 Clacu-Chr4:21492084 3.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47504 PF00847 AP2 7.50E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0726 - - - 0.0