Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0732 ATGGCCACAAGCGTCTCGCACTCTCCCGATTTCCGCCCTGAAGTTTCAGTTCCGCCGCCGACCCATGACGGCCTTTACTTCTGGCAGTTCATGATCGCCGGGTCAATTGCAGGGTCGGTCGAGCACATGGCGATGTATCCAGTGGACACTCTCAAGACCCGAATACAAGCCCTCGGCGGCGGATCGTCAACAGTCCGACAAGCACTCGGCTCGATTCTGAAGGTGGAAGGTCCGGCAGGACTCTACCGTGGAATCGGAGCAATGGGTTTGGGAGCAGGACCTGCACACGCAGTCTATTTCTCAGTGTATGAGTTTTGCAAAGAAGGGTTTTCAATGGGAAATAACAACAACCCATTAGCGCACGCCATTGCTGGAGTTTGTGCGACGGTGACGAGCGACGCGGTGATAACGCCGATGGATGTGGTGAAACAGAGGCTGCAGTTGATGAGCAGTCCTTATAAAGGGGTGGGAGAGTGTGTGAGGAGGATTTTGGTTGAGGAAGGAATTGGGGCGCTGTATGCCTCTTATCGGACGACGGTTGTGATGAACGCACCGTATACGGCGGTGTATTTTGCGACTTATGAAGCTGCAAAAAGGGGATTGAAGGAGGTTTCACTGGGAAGTGACAACGATGAGAGGCTGATTGTTCATGCTACGGCTGGTGCGGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAGTGCCAGGGAGTATGTGGTTGCGACAAATTTTCAAGCAGTTCAATTGGGTACGTACTTGGTTGTGTAGTGAAGAAAGACGGCTACAGTGGGCTGATGAAGGGATGGATTCCAAGGATGATGTTCCATGCCCCTGCTGCTGCAATTTGCTGGTCCACTTATGAGGCTTCAAAAACCTTCTTTCAACATCTCCACAACGATAACAATTAG 936 51.92 MATSVSHSPDFRPEVSVPPPTHDGLYFWQFMIAGSIAGSVEHMAMYPVDTLKTRIQALGGGSSTVRQALGSILKVEGPAGLYRGIGAMGLGAGPAHAVYFSVYEFCKEGFSMGNNNNPLAHAIAGVCATVTSDAVITPMDVVKQRLQLMSSPYKGVGECVRRILVEEGIGALYASYRTTVVMNAPYTAVYFATYEAAKRGLKEVSLGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGCVVKKDGYSGLMKGWIPRMMFHAPAAAICWSTYEASKTFFQHLHNDNN 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21567128 21568729 - ClG42_04g0073200.10 Clacu04g0732 247129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0732 311 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085(InterPro)
Clacu04g0732 311 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085(InterPro)
Clacu04g0732 311 PRINTS Mitochondrial carrier protein signature 30 43 IPR002067 GO:0055085(InterPro)
Clacu04g0732 311 PRINTS Mitochondrial carrier protein signature 43 57 IPR002067 GO:0055085(InterPro)
Clacu04g0732 311 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085(InterPro)
Clacu04g0732 311 PANTHER MITOFERRIN-1-RELATED 20 305 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Clacu04g0732 311 Gene3D Mitochondrial carrier domain 110 311 IPR023395 -
Clacu04g0732 311 Pfam Mitochondrial carrier protein 213 305 IPR018108 -
Clacu04g0732 311 Pfam Mitochondrial carrier protein 116 203 IPR018108 -
Clacu04g0732 311 Pfam Mitochondrial carrier protein 25 111 IPR018108 -
Clacu04g0732 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 109 IPR018108 -
Clacu04g0732 311 SUPERFAMILY Mitochondrial carrier 23 297 IPR023395 -
Clacu04g0732 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 200 IPR018108 -
Clacu04g0732 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 302 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1978 Clacu-Chr2:33293499 Clacu04g0732 Clacu-Chr4:21567128 7.80E-123 dispersed
Clacu04g0732 Clacu-Chr4:21567128 Clacu06g1669 Clacu-Chr6:27459671 3.00E-28 dispersed
Clacu04g0732 Clacu-Chr4:21567128 Clacu08g0880 Clacu-Chr8:18858415 4.50E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0732 K15113 - csv:101210464 592.038