Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0759 ATGGCTTCCCAAACAGAGCCTTGGCTAATGGAAAACGGAAGCCTCAAGCGTTTAACCAAAGAGCATCGACATGGCCATGGTCGAACAGCTCACAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATCTAACCCTCGTCTCCAAAGTCCAATTCGGCTGTCTCCGCAAGTTTCTTATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCGATTCCGCTTGCTATTGTCGCTCAGAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTAAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTTCTGACCGAGCAAATCGCTTATTTCACTGGCCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATTCTTGCACTGACACAAAGAAAGATAGACGTGGTGAAGTATTCTCTTTTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTCTTTTGTGGTGGCATTGCAAATCTTAGAAGGGAGCAGAATTATGACAGAAGGCAAGCTGATGTCAACTCCCTGATGCTGATGCTTTCGTTACTGTGCCACCTATTGCCGTTATTGTTTGGCTACGCCGCCGCCTCCTCTGCCTCCACGGCCGCCGCCTCCACCCTCCACCTGTCCAGAGCCAGCAGCATTGTAATGCTCTCTGCTTACATCGCTTACTTGGTCTTCCAACTTTGGACTCATCGACAACTATTTGAAGCCGAGGAAGCTGAAGACGACGACGCTCCTGAAGAAGAGGCAGTGATTGGATTCTGGAGCGCATTTGCATGGCTTGCAGGAATGACACTCCTTATTGCTTTGCTGTCCGAATATGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCAGTGAGTTTCCTTAGCATAATCTTGCTCCCTATAGTCGGAAATGCGGCCGAACACGCCGGGGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTAGGGGTTGCTTTGGGATCTGCAACACAAATTGCACTGTTTGTGATTCCACTTTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAATTTCAACCTGATGGAAACAGGGTCACTTGGATTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAATGACAATACTCCCAACTTGAGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTAA 1347 46.1 MASQTEPWLMENGSLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKVQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQNYDRRQADVNSLMLMLSLLCHLLPLLFGYAAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEAEDDDAPEEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNDNTPNLRLQSSNQAIFRA 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21896479 21901982 + ClG42_04g0075900.10 Clacu04g0759 247156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0759 448 Gene3D - 122 272 IPR044880 -
Clacu04g0759 448 Gene3D - 273 423 IPR044880 -
Clacu04g0759 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 426 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Clacu04g0759 448 FunFam Vacuolar cation/proton exchanger 122 267 - -
Clacu04g0759 448 NCBIfam calcium/proton exchanger 76 422 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Clacu04g0759 448 FunFam Vacuolar cation/proton exchanger 268 423 - -
Clacu04g0759 448 Pfam Sodium/calcium exchanger protein 93 251 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0759 448 Pfam Sodium/calcium exchanger protein 279 422 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1083 Clacu-Chr2:20252311 Clacu04g0759 Clacu-Chr4:21896479 1.30E-93 transposed
Clacu07g1423 Clacu-Chr7:28997858 Clacu04g0759 Clacu-Chr4:21896479 1.10E-91 transposed
Clacu10g0399 Clacu-Chr10:5040621 Clacu04g0759 Clacu-Chr4:21896479 3.60E-94 transposed
Clacu10g2169 Clacu-Chr10:34830172 Clacu04g0759 Clacu-Chr4:21896479 1.30E-161 wgd
Clacu03g0077 Clacu-Chr3:955976 Clacu04g0759 Clacu-Chr4:21896479 2.70E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0759 K07300 - csv:101213857 783.482