Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0770 ATGGCCACCGCTGCCGCAACCTCTTCCTTCATCGGAACACGCCTCGCCGAATTACGGCCGAGTTCCGGTCGAGTCCAAGCCCGATTCGGATTCGGGAAGAAGAAGACTCCGGCGAAGAAATCGCCGTCGTCGAAGACAATATCCAACCGGCCGTTGTGGTTTCCGGGAGCAAAGGCGCCGGAATGGCTGGACGGAAGCTTGGTCGGGGACTACGGATTCGATCCGTTCGGGTTGGGGAAACCGGCAGAATATTTGCAGTATGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCGGGAGATATTATCGGGACGAGATTTGAGAGCGCGGAAGTGAAATCGACCCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGCGAGTGCGAGCTGATCCATGGAAGGTGGGCAATGCTTGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACCGGTGTCACGTGGCAAGACGCCGGAAAAGTAGAACTAGTGGAAGGTTCATCCTACCTAGGGCAGCCACTTCCCTTCTCCCTCACCACGCTGATTTGGATCGAAGTTCTAGTGATCGGTTACATCGAGTTTCAAAGGAATGCGGAGTTAGACCCAGAGAAGAGGTTGTATCCAGGAGGCAAGTATTTCGACCCCTTGGGCTTAGCCGAGGACCCCGAAAAGAAAGCCGTCCTACAGTTGGCCGAGATCAAGCACGCTCGCCTAGCCATGGTTGCCTTCCTTGGTTTCAGCTTTCCCAGAATTTGCATTGTAAGGGAAGGAAATCGAGGATTGGTAGAGATATTGCTACAAGGAGAGGAGATGGGAAGGCTATTTTTTATTACTCTGGAAGGAAATTTTTATAGTTGCAAACACTGTAAAACTCATCTCGCCCTTTCTAAAGACATAATTTCAAGGACTTTTCATTGCAGGCATGGGAGGGCTTACTTATTTAATAACGTTGTCAATATCACAGTTGGAGAACAAGAAGAGCGGATGATGATCACGGGATTGCACACTGTTGTTGACATATTTTGTGTTGGTTGTGGCTCAATTCTTGGTTGGAAATATGAGGTTGCCTATGACAAATCCCAAAGGTACAAGGAAGGAAAATATATTCTTGAAATGTTCAAGGTGTTGGGTCCTGATGGAAACAGCTACTTAACAAGTCATGATCCGCAGCTTGCGGGTAGCGATGGCGACGATGCTTGA 1215 49.55 MATAAATSSFIGTRLAELRPSSGRVQARFGFGKKKTPAKKSPSSKTISNRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFSFPRICIVREGNRGLVEILLQGEEMGRLFFITLEGNFYSCKHCKTHLALSKDIISRTFHCRHGRAYLFNNVVNITVGEQEERMMITGLHTVVDIFCVGCGSILGWKYEVAYDKSQRYKEGKYILEMFKVLGPDGNSYLTSHDPQLAGSDGDDA 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22014047 22020621 - ClG42_04g0077000.10 Clacu04g0770 247167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0770 404 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 5 256 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Clacu04g0770 404 SUPERFAMILY Chlorophyll a-b binding protein 44 253 - -
Clacu04g0770 404 ProSiteProfiles Yippee domain profile. 287 384 IPR034751 -
Clacu04g0770 404 Pfam Chlorophyll A-B binding protein 59 253 IPR022796 -
Clacu04g0770 404 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 289 379 IPR004910 -
Clacu04g0770 404 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0026 Clacu-Chr1:253226 Clacu04g0770 Clacu-Chr4:22014047 1.60E-21 dispersed
Clacu04g0770 Clacu-Chr4:22014047 Clacu07g0413 Clacu-Chr7:4712836 6.90E-49 dispersed
Clacu03g0798 Clacu-Chr3:9009785 Clacu04g0770 Clacu-Chr4:22014047 4.00E-35 transposed
Clacu08g0839 Clacu-Chr8:18416040 Clacu04g0770 Clacu-Chr4:22014047 5.80E-25 transposed
Clacu10g2166 Clacu-Chr10:34809499 Clacu04g0770 Clacu-Chr4:22014047 2.10E-123 transposed
Clacu11g0774 Clacu-Chr11:7571826 Clacu04g0770 Clacu-Chr4:22014047 3.10E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0770 K08915 - csv:101208740 477.633