Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0781 ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGAGAGGCATGAAGAGGTGTATAGTGCTCCAGAGGAACATATAGAGACTGCTGTAAGCATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAAAGAGATCGCTCTCTCGAGAGACCGGTGCATGAATACCAGCAACCTGCACGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAACAGGCTTCCTCCAGGTTGGTTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGCATGATTCCGTCCAAGGTTCCTCTGGGCGAATCCTTCAATGATTGTATAACACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGAAAACTCGGTTTGGTGATCGATTTGACAAATTCTTATCGTTATTATACAACAGCAGATTTGAATAAGGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCCGTACCTGACAACAAGTCAGTCAATATGTTTGTTTACGAGGTCATGCAGTTCCTATCTCGTCAGAAACACTCGAAGAAGTATATTCTTGTCCACTGTACGCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTCGTGCGTGCACTGTCCATTTCTGTTACCCAGGCTCTTAAAATGTTTGCTGATGCACGCCCTCCTGGAATTTACAAGCCTGACTACGTTGATGCATTATATACCTTTTACCATGAAAGAAAACCTGAAGCAGTTGTTTGTCCATCCACGCCTGAGTGGAAGAGATCTTCAGATCTTGATCTTAATGGCGAAGCAGTTCCAGATGATGATGATGATGGAGGTCCTGCTGCTCCTTTGAATGAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATATTTTGGGTGATGAGATACCTGAGGACCAAGAACGTGCTTTGAAACAATTTTGCTATCAAATGCTTAAATTGAATGCTGGAGCAAGAGCAAATTTGCAATTTCCTGGGTCGCATCCAGTGTCTCTTAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACAAGATATATGATGCTCATTACCATGGATGGATGCTACTTGATTGACAGAGGTTTTAAATTTCGAAGAGTCCAAATGAGATTCCCATACAGAAATGCAAATGATGGCCAAGGTGAGAAGATTCACCACTATACACTACTTGATGGAGAAATGATTATTGATACTATGCCAGACTCGCAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGACAATTAATCATGTTCCGGTCATTGAGCGTCCTTTCTACGAACGGTGGAAGATGCTTGAAAAAGAAGTGATCGAACCTCGCAATTCTGAGCGCCAGAGTATTTACCAAAGCAGGAACCCTCATTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCCACGGTTACCAAACTTTTGAAGGAGTTCATACCTAGGCTTTCACATGATGCTGATGGTCTGATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAGGGTCTTTTAAAGTGGAAATATCCAGAAATGAACTCAGTCGACTTCCTATTCGAGTTGGGTGAAGATGATTCTGAGGTTCTTATTTTGTTTGAACGAGGAAAGAGGAAGACCATGGAAGGAAATAGGGTTAAGTTCAAAGATGGGGATCCCTCCTTTTATTCAGGAAAGATTGTCGAGTGCTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGTATCAGGACGGACAAAACAACTCCTAATGATTTCAATACTTATAAAAAGGTCATGCGGAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTGCCCATGTATGCAGATAGGATAAGGATTGATAGTAAAGCAGCTCAACATACGAATTCAACACGACGGAGCGGAAAGACGCCACTGCAGTTGGATTGCACGGATCCTTTCTGGGGGTTTTGGCAATTTGATGTTGTTGGCTTTGCGTTTCATCTTGCGGAGCTACGGTGTGGCGGATTCATGAAATTCTCGGTGATTTTAGCTCTTCTGATTTGTCTGATTCTCTTCGTTCCGTTGAAATGCATTCACGGCGAGGAGCCCAAGAAAAACAAATTTCGGGAACGAGAAGCCACGGATGATGCCCTTGGATACCCTGAGATAGACGAGGATGCTTTGTTGAATACACAATGTCCAAAGAATTTGGAGCTAAGATGGCAAACAGAAGTGAGTTCTAGCATATATGCTACACCCTTGATCGCTGATATTAACAGTGATGGGAAACTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAGGTTCTAGAAGGTTCTGATGGAGACAAAATGCCAGGGTGGCCTGCTTTCCATCAGTCGACTGTGCATGCTAGTCCTCTTCTATATGATATAGACAAAGATGGTGTGAGGGAAATAGCTTTGGCCACATACAATGGAGAAGTGCTCTTTTTCAGGGTGTCAGGATATATGATGACAGACAAGTTAGAGATACCACGTCGCCGTGTGCGCAAGAATTGGTATGTGAGTTTAAATCCAGATCCAGTGGACCGGTCTTATCCAGATGTTCAAGATGAACAACTTGTCAGAGAAGCAACTAAGACAAAATCAATCTCTCAAACAAATGGAAGCGTTCCAGAGTTAAACCAGACAACAGAGACTACGATAAATGGAAGTGTGACCGAACTAAATACTTCGGCTGCCATACCAACTCAAATGTTGAATATTTCAGATACAGTGAATAATAGTATGGTGAATGACAGCAAAGTTGAACCGGATATTGTCCTGCCTACAAGCATGGCCAACAATGCTTCTATCAATGCTACAACTGGAATACTCGATAATAAGAATGGAACTGGGACGAGTAGACGAATTTTGGAAGTTAGTGACTCCAAACAATCTCAAGAAGATGGTTCTGGGTCCAAGGCAGATGGTAGTGGAGATGAGCATGTTGCCACAGTTGAAAATGATGAAGCTTTGGAAGCAGAAGCTGATTCATCATTTGATATATTCCGTGAAAATGATGAGCTGGCTGATGAGTATAATTATGACTATGATGATTATGTTGATGAATCCATGTGGGGAGATGAGGAGTGGACTGAAGTTAAGCATGAAAAAGTGGAGGAATATGTGGATATTGATGCACATTTATTGTGCACTCCTGTGATAGCTGACATTGACAACGATGGGATATCTGAAATGATTGTAGCTGTTTCATACTTTTTTGATCATGAGTACTATGATAACCCAGAGCACAAGAAAGAATTGGGTGATCTTGACATTGGGAAATATGTAGCTGGGGCCATTGTTGTTTTCAATCTGGATACAAAGCAAGTGAAGTGGACGACTGAACTAGACTTGAGCACAGATTCTGCGAACTTTCGTGCTTATATATATTCCTCCCCTACTGTCATCGATTTGGATGGTGATGGGAATCTGGATATTCTTGTTGGCACATCCTTTGGCTTGTTCTATGTCTTGGACCATCATGGCAAGGTGAGAGAAAAGTTTCCTCTTGAAATGGCTGATATTCAGGGAGCTGTTGTTGCAGCTGATATCAATGATGATGGGAAAATTGAACTTGTGACTGCTGATACACACGGAAATGTTGCTGCCTGGACTGCTCAAGGTCAAGAAATTTGGGAAAAGAATCTAAAGAGCCTTATACCGCAGGGTCCATCCATTGGTGATGTTGATGGGGACGGTCGTACTGATGTGGTGGTGCCGACGGTATCAGGAAATATATATGTTCTCAGTGGAAAGGATGGGTCATTTGTTCGTCCTTACCCCTATAGAACCCATGGAAGAGTGATGAATCAAGTTCTTCTTGTTGATTTGAACAAACGCGATGACAAAAAGAAGGGGCTTACTCTGGTCACATCATCGTTTGATGGGTATTTGTATCTCATTGATGGACCGACATCATGTGCTGATGTTATTGACATTGGCGAGACTTCATATAGCATGGTTCTGGCTGACAATGTTGATGGTGGAGATGATCTTGATCTTATTGTCTCAACCATGAATGGAAATGTTTTCTGCTTTTCAACTCCTGCTCCACATCATCCTCTCAAGGCATGGAGATCAACTAATCAAGGAAGAAACAACAATGCAGTCCGGCACAACCGTGAAGGTGTTTTTGTTTCACATTCATCTAGAACTTTCCGTGACGAGGAAGGCAAGAACTTCTGGGTTGAGATTGAGATTGTAGACCGTTACAGAAATCCTTCAGGGACTCAAGCACCATATAACGTCACTACAACCTTGATGGTTCCTGGCAATTACCAGGGAGAGAGGAAAATAAAACAAAACCAAATCTTCAAAGAACCAGGCAAACATCGGATAAAACTTCCAACCGTCAGTGTTAGAACAACAGGCACTGTTTTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCGGATGAGTTCTCCCTCACATTCCACATGTATTACTATAAGCTCCTGAAGTGGCTTCTCGTCCTCCCGATGCTTGGAATGTTTGGTGTGCTCATGATCCTTCGCCCACAAGAGCCTGTGCCATTGCCATCATTTTCCCGGAACACTAACCTATGA 4722 42.42 MIVSMDLNASPVPEEDEETFERHEEVYSAPEEHIETAVSIARREREERKRRLKRDRSLERPVHEYQQPARDQFYPSKNQKSDRNRLPPGWLDCPAFGQEICCMIPSKVPLGESFNDCITPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTADLNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVMQFLSRQKHSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFADARPPGIYKPDYVDALYTFYHERKPEAVVCPSTPEWKRSSDLDLNGEAVPDDDDDGGPAAPLNENHDDGAQVMTNDDILGDEIPEDQERALKQFCYQMLKLNAGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGQGEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMTINHVPVIERPFYERWKMLEKEVIEPRNSERQSIYQSRNPHYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFELGEDDSEVLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRIDSKAAQHTNSTRRSGKTPLQLDCTDPFWGFWQFDVVGFAFHLAELRCGGFMKFSVILALLICLILFVPLKCIHGEEPKKNKFREREATDDALGYPEIDEDALLNTQCPKNLELRWQTEVSSSIYATPLIADINSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRRVRKNWYVSLNPDPVDRSYPDVQDEQLVREATKTKSISQTNGSVPELNQTTETTINGSVTELNTSAAIPTQMLNISDTVNNSMVNDSKVEPDIVLPTSMANNASINATTGILDNKNGTGTSRRILEVSDSKQSQEDGSGSKADGSGDEHVATVENDEALEAEADSSFDIFRENDELADEYNYDYDDYVDESMWGDEEWTEVKHEKVEEYVDIDAHLLCTPVIADIDNDGISEMIVAVSYFFDHEYYDNPEHKKELGDLDIGKYVAGAIVVFNLDTKQVKWTTELDLSTDSANFRAYIYSSPTVIDLDGDGNLDILVGTSFGLFYVLDHHGKVREKFPLEMADIQGAVVAADINDDGKIELVTADTHGNVAAWTAQGQEIWEKNLKSLIPQGPSIGDVDGDGRTDVVVPTVSGNIYVLSGKDGSFVRPYPYRTHGRVMNQVLLVDLNKRDDKKKGLTLVTSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPAPHHPLKAWRSTNQGRNNNAVRHNREGVFVSHSSRTFRDEEGKNFWVEIEIVDRYRNPSGTQAPYNVTTTLMVPGNYQGERKIKQNQIFKEPGKHRIKLPTVSVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLMILRPQEPVPLPSFSRNTNL 1573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22153665 22179962 - ClG42_04g0078100.10 Clacu04g0781 247178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0781 1573 CDD Adenylation_mRNA_capping 324 552 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Clacu04g0781 1573 FunFam mRNA capping enzyme family protein 550 658 - -
Clacu04g0781 1573 Pfam Dual specificity phosphatase, catalytic domain 138 258 IPR000340 GO:0016311(InterPro)
Clacu04g0781 1573 Gene3D - 550 658 IPR012340 -
Clacu04g0781 1573 SUPERFAMILY Integrin alpha N-terminal domain 771 1329 IPR028994 -
Clacu04g0781 1573 Gene3D Protein tyrosine phosphatase superfamily 82 294 IPR029021 -
Clacu04g0781 1573 FunFam mRNA capping enzyme family protein 82 296 - -
Clacu04g0781 1573 MobiDBLite consensus disorder prediction 1010 1031 - -
Clacu04g0781 1573 Pfam FG-GAP-like repeat 1234 1290 IPR013517 -
Clacu04g0781 1573 Gene3D - 1076 1404 IPR015943 GO:0005515(InterPro)
Clacu04g0781 1573 MobiDBLite consensus disorder prediction 22 66 - -
Clacu04g0781 1573 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 252 IPR000387 GO:0016311(InterPro)
Clacu04g0781 1573 PANTHER - 742 1560 IPR045232 -
Clacu04g0781 1573 ProSiteProfiles ATP-dependent DNA ligase family profile. 435 580 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Clacu04g0781 1573 MobiDBLite consensus disorder prediction 1 85 - -
Clacu04g0781 1573 FunFam mRNA capping enzyme, putative 312 549 - -
Clacu04g0781 1573 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Clacu04g0781 1573 CDD RNA_5'-triphosphatase 89 255 - -
Clacu04g0781 1573 Pfam mRNA capping enzyme, catalytic domain 353 551 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Clacu04g0781 1573 SUPERFAMILY Nucleic acid-binding proteins 554 665 IPR012340 -
Clacu04g0781 1573 Pfam mRNA capping enzyme, C-terminal domain 581 649 IPR013846 -
Clacu04g0781 1573 ProSitePatterns Tyrosine specific protein phosphatases active site. 205 215 IPR016130 GO:0016311(InterPro)
Clacu04g0781 1573 Gene3D DNA ligase/mRNA capping enzyme 312 549 - -
Clacu04g0781 1573 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 313 552 - -
Clacu04g0781 1573 MobiDBLite consensus disorder prediction 275 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0781 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g852 . . . . . Bpe03g01015 . Bma10g00319 . . Cma03g00375 . Car03g00328 Car07g01025 Sed14g0660 Cpe10g00935 . Bhi03g02108 Tan03g0830 Cmetu08g1543 . Hepe04g0778 . . Cla04g00726 Cam04g0737 Cec04g0863 Cco04g0913 Clacu04g0781 Cmu04g0770 Cre04g0825 . . . . . Csa04g01589 Chy08g00661 . Blo07g01154 . . Bda05g00942 . . . . . Cmo03g00384 . . . . . . Cpe19g00296 . . . . . . . . . . . . . . . . . Cme08g02497
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu09g1033 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.4e-122 436.4
Clacu06g1933 . 252 1147 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Clacu06g0577 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 58.0 2.6e-42 168.7
Clacu09g2109 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Clacu05g2338 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.1e-116 414.1
Clacu07g0502 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.4e-98 354.0
Clacu10g1408 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 1.6e-203 705.7
Clacu02g1854 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Clacu09g1115 . 25 231 Protein tyrosine phosphatase (PTP) family AT2G32960 64.0 9.8e-73 270.4
Clacu03g1046 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.2e-55 210.7
Clacu10g0242 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.9e-101 365.5
Clacu11g0342 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Clacu11g0342 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Clacu10g0242 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Clacu02g1854 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Clacu09g1115 . 34 232 Protein tyrosine phosphatase (PTP) family AT4G03960 63.8 2.3e-69 258.8
Clacu03g1046 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Clacu03g1046 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 4.2e-79 291.2
Clacu02g1854 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Clacu07g0292 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Clacu10g1527 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Clacu02g0667 . 82 685 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 3.3e-220 761.5
Clacu01g1774 . 115 671 Protein tyrosine phosphatase (PTP) family AT3G19420 58.2 4.8e-187 651.4
Clacu02g0667 . 116 685 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 3.8e-179 625.2
Clacu01g1774 . 117 671 Protein tyrosine phosphatase (PTP) family AT3G50110 59.2 3.6e-177 618.6
Clacu06g1324 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Clacu08g0952 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Clacu02g2250 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 7.9e-70 260.8
Clacu10g0180 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Clacu04g0781 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Clacu04g0781 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.9e-258 888.6
Clacu04g0781 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 3.9e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007157 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 0 1 2 1 1 0 1 1 1 0 1 3 3 1 37