Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0803 ATGGGGGAATTAGATCAAGTGCAGGTATTTGGTGGATGGATGAGTCCCTTTAGCCGTAGAGTGGAGTTGGGTTTGAAACTCAAAGCCATAAAATATGAATATATTGAGGAAGACTTGAAGAATAAGAGCCATTTGCTTCTGAAATACAATCCAATTTACAAGAAGGTTCCTGTGCTCATTCACAATGGAAACCCCATTTCAGAGTCGATTATCATCCTTGAATACGTTGATGAAGTCTGGAATTCAGTTTACCCTTTCTTCCCTCAAGATCTCTATCAAAGAGCTCAAGCAAGGTTTTGGGCTAAGTTTATCGATGACAAGGTTGTGGCTGCTATACTGAAAGCTGCTCGAAGCAAAGGAGAAGAGAGAGAGAAGGCTATAGAAGAAACAGAGAAAACATTAGAACCACTTGAGAAGGAGCTTGAAGGCAACAAGTTTTTTGGAGGAGAGAAAATTGGATTTGTGGACATTGTTGGGATTGTAGTAGCCTATTGGGTTCCTGCCATTGAAGAAGCTTTTGGATTTCAGCTGTTGACAAGTAACAATAAGTTTCCAAATTTAAGCAAATGGAGTGAAGAGATTGTGAACCACAACCTGGTCAAACAGTTTCCAGCGGCTTACGCAGTGGCTTACGGCACTCTTAGCCTCCGCCACAAGAAATTGAAACAAAGTCGGCGAGTGGAGTTAGCTCTCAAACTCAAAGGCGTCGAATACCAATACTTTGAGGAAGATTTACCCCACAACAAGAGCCATTTGCTGCTGAAATACAATCCAATTTACAAGAAAGTGCCTGTTCTACTCCACCATGGAAAACCCATTGCAGAGTCTCTTGTAATCCTTGAATACATTGATGAAATCTGGAAAACCAATCCCATTTTACCCCAACATCCCCATCAAAGAGCTCTTGCCAGGTTCTGGGCTAAGTTTATCGATGACAAGGTTGTGTGTGCAGTAGTGAAGGCTGCTGGAAGCAAAGAAGAAGAGAGAAAGAAAGCTATAGAGGAAGCAAGGGAGGCATTGGAAGCACTTGAGAAAGAGCTTAAAAGCAACAACTTCTTTGGAGGAGAAGAAATTGGGTTTGTGGACATTGTTGGGACTGTGATAGCTGGTTGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGCTGCTCACAACTAATAACTTCCCTAACCTAATCAAATGGAGTGAACAGCTTCTTAACCATGCTGTTGTAAACCAGATTCTGCCTCCAAAAAATGAGATTGTTTCCTTTATGCAAGCTAATTGGAAAGAATTGAAGAAGAAGAGCCACTCCATCCTCAAATTCAACCCTGTTTACAAGAAGGTCCCTGTGTTCGTCCATGGTGGAAAACCAATTGCAGACTCCATTCTTATTCTTCACTACATAGACGACACTTGGAAGGACAATCCCATTTTACCTCAACATCCTTATCACAAAGCTCTTGCACTCTTTTGGCCCAACTTCTTGGATGGCAAGCTGCTGCCTGCATTAATCAAAGCAAGGAGATCAAAGGAGGGAAAAGAGAGAGAAGAGGCAATAGCAGAGGCAGGGGAGGCATTAAGAGCACTAGAAGAAGAGCTTAAAGGGAAGAAATTCTTTGGAGGAGAGACATTAGGATTTGTTGACATTGTTGCTAATTTCATACCATATTGGAGTCCAGCCATGGAAGAAGCTTTAGGTGTTCAAATACTGAGCAATGAGTTGCAGAAGCTTCCAAGGCTAAGCCAATGGTGCCATGACTTTCTTCAACATCCCATTGTCAAACACAATCTGCCTCCCAAAACTCAACTCCTTTCTTTCTTCAAATCACAGTTTGGACCCAATAATCTTGCTTCTTCTAAATGA 1848 41.99 MGELDQVQVFGGWMSPFSRRVELGLKLKAIKYEYIEEDLKNKSHLLLKYNPIYKKVPVLIHNGNPISESIIILEYVDEVWNSVYPFFPQDLYQRAQARFWAKFIDDKVVAAILKAARSKGEEREKAIEETEKTLEPLEKELEGNKFFGGEKIGFVDIVGIVVAYWVPAIEEAFGFQLLTSNNKFPNLSKWSEEIVNHNLVKQFPAAYAVAYGTLSLRHKKLKQSRRVELALKLKGVEYQYFEEDLPHNKSHLLLKYNPIYKKVPVLLHHGKPIAESLVILEYIDEIWKTNPILPQHPHQRALARFWAKFIDDKVVCAVVKAAGSKEEERKKAIEEAREALEALEKELKSNNFFGGEEIGFVDIVGTVIAGWVPAIEECFGFELLTTNNFPNLIKWSEQLLNHAVVNQILPPKNEIVSFMQANWKELKKKSHSILKFNPVYKKVPVFVHGGKPIADSILILHYIDDTWKDNPILPQHPYHKALALFWPNFLDGKLLPALIKARRSKEGKEREEAIAEAGEALRALEEELKGKKFFGGETLGFVDIVANFIPYWSPAMEEALGVQILSNELQKLPRLSQWCHDFLQHPIVKHNLPPKTQLLSFFKSQFGPNNLASSK 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22370593 22377880 + ClG42_04g0080300.10 Clacu04g0803 247200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0803 615 SFLD Main (cytGST) 224 422 - -
Clacu04g0803 615 SFLD Main (cytGST) 425 605 - -
Clacu04g0803 615 SFLD Main (cytGST) 5 221 - -
Clacu04g0803 615 SUPERFAMILY GST C-terminal domain-like 465 606 IPR036282 -
Clacu04g0803 615 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Clacu04g0803 615 CDD GST_C_Tau 92 202 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu04g0803 615 CDD GST_C_Tau 297 421 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu04g0803 615 FunFam Tau class glutathione S-transferase 1 89 - -
Clacu04g0803 615 CDD GST_N_Tau 7 80 - -
Clacu04g0803 615 Coils Coil 322 350 - -
Clacu04g0803 615 Pfam Glutathione S-transferase, C-terminal domain 101 197 IPR004046 -
Clacu04g0803 615 Pfam Glutathione S-transferase, C-terminal domain 306 401 IPR004046 -
Clacu04g0803 615 Pfam Glutathione S-transferase, C-terminal domain 486 586 IPR004046 -
Clacu04g0803 615 Coils Coil 113 133 - -
Clacu04g0803 615 Gene3D Glutaredoxin 4 89 - -
Clacu04g0803 615 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 223 IPR010987 -
Clacu04g0803 615 SUPERFAMILY Thioredoxin-like 427 472 IPR036249 -
Clacu04g0803 615 SFLD Main.3: Omega- and Tau-like 5 221 IPR045073 -
Clacu04g0803 615 SFLD Main.3: Omega- and Tau-like 425 605 IPR045073 -
Clacu04g0803 615 SFLD Main.3: Omega- and Tau-like 224 422 IPR045073 -
Clacu04g0803 615 CDD GST_N_Tau 224 287 - -
Clacu04g0803 615 Gene3D - 90 220 - -
Clacu04g0803 615 Gene3D Glutaredoxin 221 295 - -
Clacu04g0803 615 Gene3D Glutaredoxin 421 472 - -
Clacu04g0803 615 Pfam Glutathione S-transferase, N-terminal domain 429 464 IPR004045 -
Clacu04g0803 615 Pfam Glutathione S-transferase, N-terminal domain 225 285 IPR004045 -
Clacu04g0803 615 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Clacu04g0803 615 SUPERFAMILY GST C-terminal domain-like 285 423 IPR036282 -
Clacu04g0803 615 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 476 606 IPR010987 -
Clacu04g0803 615 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 204 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Clacu04g0803 615 SUPERFAMILY GST C-terminal domain-like 78 209 IPR036282 -
Clacu04g0803 615 FunFam Tau class glutathione S-transferase 473 609 - -
Clacu04g0803 615 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 296 419 IPR010987 -
Clacu04g0803 615 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 211 291 IPR004045 -
Clacu04g0803 615 FunFam Tau class glutathione S-transferase 293 429 - -
Clacu04g0803 615 Coils Coil 507 527 - -
Clacu04g0803 615 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 414 471 IPR004045 -
Clacu04g0803 615 FunFam Tau class glutathione S-transferase 87 222 - -
Clacu04g0803 615 SUPERFAMILY Thioredoxin-like 224 314 IPR036249 -
Clacu04g0803 615 CDD GST_C_Tau 477 603 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu04g0803 615 Gene3D - 473 609 - -
Clacu04g0803 615 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Clacu04g0803 615 Gene3D - 296 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0803 Clacu-Chr4:22370593 Clacu04g0814 Clacu-Chr4:22456606 9.20E-77 dispersed
Clacu04g0803 Clacu-Chr4:22370593 Clacu04g0811 Clacu-Chr4:22441959 4.30E-74 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0803 K00799 - rcu:8279820 353.214