Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0811 ATGGGAGAAGAAGAAGTGCAGGTGTTTGGTTTCCGGTCAGGTCCGTATAGTCTGAGAGTGGAATTGGCTCTTAAACTCAAAGGAGTTGATTATCAACACATTGACGAGGATTTGGTGAACAAAAAGAGCGATTTGCTGTTGAAATACAACCCAATTTACAAGAAAGTGCCGGTTCTTGTTCACCATGGGAAGCCCATTTCAGAGTCTCTTGTAATCCTTGAATACATCGAAGAAAAATGGAGAGAAAATTATCTAATCTTGCCCCAAGATCCCCATCAAAGAGCTCTTGCCAGATTTTGGGCTAAGTACATTGATGACAAGGTAGTGCCTGCAGTGCAGAAAGCTGCAAGAAGCAAAGAAGAAGAGAGAGAGAAGAGCATAGAAGAAGCTCAGGAGACATTGGAACCACTTGAGAAAGAGCTTAAAAACAAGTTGTTCTTTGGAGGAGACAAAATTGGATTTGTGGACATTGTAGGCCTGGTTTTAGCTTGCTGGATTCCTGCCACTGAAGAAGCTGTAGGCTTTGAGCTGCTATCAAACCACAAATTTCCAAATCTAACCAAATGGGCTCAACATTTTGTGAACCACAGCGTTGCAAAGGAAGTTTTGCCTCAAAAAGATGTTCTTGTTGCCTTCTTGAAGAACGTTGTGTTTGTTCCGAAAAACTAG 669 41.85 MGEEEVQVFGFRSGPYSLRVELALKLKGVDYQHIDEDLVNKKSDLLLKYNPIYKKVPVLVHHGKPISESLVILEYIEEKWRENYLILPQDPHQRALARFWAKYIDDKVVPAVQKAARSKEEEREKSIEEAQETLEPLEKELKNKLFFGGDKIGFVDIVGLVLACWIPATEEAVGFELLSNHKFPNLTKWAQHFVNHSVAKEVLPQKDVLVAFLKNVVFVPKN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22441959 22442952 - ClG42_04g0081100.10 Clacu04g0811 247208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0811 222 FunFam Glutathione S-transferase GSTU6 1 87 - -
Clacu04g0811 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Clacu04g0811 222 Gene3D - 90 218 - -
Clacu04g0811 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 210 IPR010987 -
Clacu04g0811 222 SUPERFAMILY GST C-terminal domain-like 80 215 IPR036282 -
Clacu04g0811 222 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Clacu04g0811 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 214 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Clacu04g0811 222 SFLD Main (cytGST) 2 215 - -
Clacu04g0811 222 Pfam Glutathione S-transferase, N-terminal domain 5 78 IPR004045 -
Clacu04g0811 222 CDD GST_C_Tau 91 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu04g0811 222 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Clacu04g0811 222 Gene3D Glutaredoxin 1 89 - -
Clacu04g0811 222 CDD GST_N_Tau 6 80 - -
Clacu04g0811 222 FunFam Tau class glutathione S-transferase 87 218 - -
Clacu04g0811 222 Pfam Glutathione S-transferase, C-terminal domain 99 195 IPR004046 -
Clacu04g0811 222 Coils Coil 120 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0811 K00799 - - csv:101215228 370.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0811 Clacu-Chr4:22441959 Clacu04g0814 Clacu-Chr4:22456606 4.50E-82 dispersed
Clacu04g0803 Clacu-Chr4:22370593 Clacu04g0811 Clacu-Chr4:22441959 4.30E-74 proximal
Clacu04g0811 Clacu-Chr4:22441959 Clacu04g0812 Clacu-Chr4:22446326 9.40E-40 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g0599 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Clacu09g0601 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.0 6.2e-65 244.2
Clacu09g0600 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 1.1e-58 223.4
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 1.8e-64 242.7
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 1.0e-59 226.9
Clacu09g0601 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.5e-60 229.9
Clacu09g0599 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Clacu09g0600 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 3.3e-52 202.2
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.2e-62 235.7
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 1.0e-56 216.9
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 2.0e-63 239.2
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 1.1e-58 223.4
Clacu09g0601 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.6e-68 255.8
Clacu09g0599 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 7.0e-66 247.7
Clacu09g0600 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.4e-61 233.4
Clacu09g0602 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.5 4.9e-73 271.2
Clacu09g0599 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Clacu04g0811 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 5.6e-64 241.1
Clacu04g0814 . 3 216 Glutathione S-transferase Gene Family AT3G09270 53.0 8.0e-63 237.3
Clacu04g0803 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 6.0e-58 221.1
Clacu05g0286 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.3e-57 219.9
Clacu04g0815 . 3 212 Glutathione S-transferase Gene Family AT3G09270 53.8 3.3e-56 215.3
Clacu07g1056 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.4e-88 320.9
Clacu07g1058 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Clacu07g1057 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 9.9e-82 300.1
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G78380 59.0 2.4e-64 242.3
Clacu07g1059 . 1 201 Glutathione S-transferase Gene Family AT1G78380 51.7 2.7e-55 212.2
Clacu07g1056 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.4e-80 294.3
Clacu07g1058 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Clacu07g1057 . 7 216 Glutathione S-transferase Gene Family AT1G78370 56.2 3.3e-69 258.5
Clacu01g0854 . 7 203 Glutathione S-transferase Gene Family AT1G78370 56.3 9.5e-61 230.3
Clacu07g1056 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.4e-80 295.4
Clacu07g1058 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.2e-80 293.5
Clacu07g1057 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 7.5e-74 273.9
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G78340 55.5 8.6e-62 233.8
Clacu07g1059 . 1 199 Glutathione S-transferase Gene Family AT1G78340 50.3 1.9e-53 206.1
Clacu07g1056 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.5e-61 230.7
Clacu07g1056 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.0e-91 330.1
Clacu07g1058 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Clacu07g1057 . 1 220 Glutathione S-transferase Gene Family AT1G17180 60.9 1.2e-79 293.1
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G17180 57.0 7.9e-63 237.3
Clacu07g1059 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.8 1.4e-56 216.5
Clacu07g1056 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.8e-75 279.3
Clacu07g1058 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Clacu07g1057 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.5 4.8e-68 254.6
Clacu07g1059 . 1 185 Glutathione S-transferase Gene Family AT1G17190 53.5 1.2e-50 196.8
Clacu07g1056 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.1e-72 270.0
Clacu07g1058 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.9e-70 260.8
Clacu07g1057 . 3 212 Glutathione S-transferase Gene Family AT3G43800 51.6 9.6e-64 240.4
Clacu01g0854 . 1 203 Glutathione S-transferase Gene Family AT3G43800 51.0 3.0e-57 218.8
Clacu07g1056 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.1e-71 264.2
Clacu07g1058 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.3e-68 254.2
Clacu01g0854 . 1 201 Glutathione S-transferase Gene Family AT1G53680 56.6 4.1e-59 224.9
Clacu07g1059 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.5 1.3e-52 203.4
Clacu02g0037 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Clacu05g0258 . 742 905 Glutathione S-transferase Gene Family AT2G02390 51.5 6.5e-45 177.6
Clacu02g0037 . 12 224 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Clacu05g0258 . 699 904 Glutathione S-transferase Gene Family AT2G02380 53.1 1.3e-57 219.9
Clacu07g0801 . 101 337 Glutathione S-transferase Gene Family AT5G41210 67.9 3.1e-92 335.1
Clacu07g0801 . 101 337 Glutathione S-transferase Gene Family AT5G41240 66.2 3.5e-89 326.2
Clacu10g2039 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 6.9e-89 323.9
Clacu10g2038 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Clacu02g1410 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.4e-80 295.0
Clacu02g1410 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.1e-85 313.5
Clacu10g2039 . 6 233 Glutathione S-transferase Gene Family AT3G55040 61.0 1.0e-78 290.4
Clacu10g2038 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 1.2e-77 287.0
Clacu10g2039 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.4 1.4e-94 342.8
Clacu10g2038 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Clacu02g1410 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.6e-82 301.6
Clacu02g1383 . 3 230 Glutathione S-transferase Gene Family AT1G19570 61.1 1.4e-77 286.2
Clacu05g1301 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Clacu02g1383 . 3 229 Glutathione S-transferase Gene Family AT1G75270 65.4 1.7e-83 305.8
Clacu05g1301 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 3.9e-75 278.1
Clacu05g1301 . 9 274 Glutathione S-transferase Gene Family AT5G16710 68.3 7.0e-103 370.5
Clacu02g1383 . 5 228 Glutathione S-transferase Gene Family AT5G16710 54.9 5.1e-69 258.1
Clacu11g1781 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.7e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162