Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0811 ATGGGAGAAGAAGAAGTGCAGGTGTTTGGTTTCCGGTCAGGTCCGTATAGTCTGAGAGTGGAATTGGCTCTTAAACTCAAAGGAGTTGATTATCAACACATTGACGAGGATTTGGTGAACAAAAAGAGCGATTTGCTGTTGAAATACAACCCAATTTACAAGAAAGTGCCGGTTCTTGTTCACCATGGGAAGCCCATTTCAGAGTCTCTTGTAATCCTTGAATACATCGAAGAAAAATGGAGAGAAAATTATCTAATCTTGCCCCAAGATCCCCATCAAAGAGCTCTTGCCAGATTTTGGGCTAAGTACATTGATGACAAGGTAGTGCCTGCAGTGCAGAAAGCTGCAAGAAGCAAAGAAGAAGAGAGAGAGAAGAGCATAGAAGAAGCTCAGGAGACATTGGAACCACTTGAGAAAGAGCTTAAAAACAAGTTGTTCTTTGGAGGAGACAAAATTGGATTTGTGGACATTGTAGGCCTGGTTTTAGCTTGCTGGATTCCTGCCACTGAAGAAGCTGTAGGCTTTGAGCTGCTATCAAACCACAAATTTCCAAATCTAACCAAATGGGCTCAACATTTTGTGAACCACAGCGTTGCAAAGGAAGTTTTGCCTCAAAAAGATGTTCTTGTTGCCTTCTTGAAGAACGTTGTGTTTGTTCCGAAAAACTAG 669 41.85 MGEEEVQVFGFRSGPYSLRVELALKLKGVDYQHIDEDLVNKKSDLLLKYNPIYKKVPVLVHHGKPISESLVILEYIEEKWRENYLILPQDPHQRALARFWAKYIDDKVVPAVQKAARSKEEEREKSIEEAQETLEPLEKELKNKLFFGGDKIGFVDIVGLVLACWIPATEEAVGFELLSNHKFPNLTKWAQHFVNHSVAKEVLPQKDVLVAFLKNVVFVPKN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22441959 22442952 - ClG42_04g0081100.10 Clacu04g0811 247208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0811 222 FunFam Glutathione S-transferase GSTU6 1 87 - -
Clacu04g0811 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Clacu04g0811 222 Gene3D - 90 218 - -
Clacu04g0811 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 210 IPR010987 -
Clacu04g0811 222 SUPERFAMILY GST C-terminal domain-like 80 215 IPR036282 -
Clacu04g0811 222 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Clacu04g0811 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 214 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Clacu04g0811 222 SFLD Main (cytGST) 2 215 - -
Clacu04g0811 222 Pfam Glutathione S-transferase, N-terminal domain 5 78 IPR004045 -
Clacu04g0811 222 CDD GST_C_Tau 91 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu04g0811 222 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Clacu04g0811 222 Gene3D Glutaredoxin 1 89 - -
Clacu04g0811 222 CDD GST_N_Tau 6 80 - -
Clacu04g0811 222 FunFam Tau class glutathione S-transferase 87 218 - -
Clacu04g0811 222 Pfam Glutathione S-transferase, C-terminal domain 99 195 IPR004046 -
Clacu04g0811 222 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0811 Clacu-Chr4:22441959 Clacu04g0814 Clacu-Chr4:22456606 4.50E-82 dispersed
Clacu04g0803 Clacu-Chr4:22370593 Clacu04g0811 Clacu-Chr4:22441959 4.30E-74 proximal
Clacu04g0811 Clacu-Chr4:22441959 Clacu04g0812 Clacu-Chr4:22446326 9.40E-40 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0811 K00799 - csv:101215228 370.933