Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0823 ATGGCGGAGGGTTTTGAAGTTTACCATGTCCCACAACAAAGCAGGAGAGACAAGCTTAGAGTTGGAATTGGAATTGGTACTACTAATTCTACTAATTCTATTAATCATCATAATAATTTCTTCCCTTTATATGATGATCCTTCTTCTTTTATTTCTTCCGATTTTGATTTTCATCAAAATCCCTCTTTTCAACTTTATCATCATCATAATTACCCTCCTACCTCTGCCGTCACCGCCGCCGCCCTCCACCACCACCTCCCTCCGCTCCTCTCCGAACAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTATCATTCTACTTTACCACTTCAAGCCTCAAAATTCTTCAAGCCAGCTCAGCAGCTCCTCCATGACCTATTTGATTACGCCCCCCATAACTCCTCCGACAAGTTGCTGCCGGATTCCGCCCTTCTTGACACCTTGGAAGGTGATATTCCCCCCGCCGCCGATGATGGATTTGAAACCCACACGACAAAATCTAGGCTTATTACCATGCTCCACGAGGTTTATAGAAGATATAAACTATACTATCAGCAAATGCAAGCAGTGGTCACAACATTTGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCGTAAAAGCCATGTTTAAGCACTTCAAATTCTTAAAGAACGCCATAGCCGACCAGCTCCAATTCAACAAGCAGCACCAACCGCCGTCTTACAATCCATATTTTCAAAGATCCATTAACAACCACGGTGCTGGATTCGTCGACCACCAACCCGTTTGGCGCCCGCAGCGAGGCCTCCCTGAGAGTGCTGTCACCGTCCTCCGAGCTTGGCTCTTTGAGCACTTCCTCCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACGGGACTCTCGAGAAGTCAGGTATCCAACTGGTTCATCAATGCAAGAGTGAGACTGTGGAAACCGATGGTTGAAGAAATCCACATGTTAGAAACAAGGCAAGCTCAAAAATCTCAGCAAAAGGAAGCCAACGATAATAACGCCTCAAACAACAACAACGACCATCTTTCATCCACAAACGAATCCTTATTGAAACCCGACGGCCACAACAACAACAATGCATCTTCTTCAAACCACGACCACCACCCTCTAGATTTGTCCAACACCCATTTCTTTCCAACCCACCACCCTCACGCCGCTGCCGGAGCCACCGCTATTGGCGGCAGTGGCAACGTTTCCTTGACACTCGGCCTCCACCAAAACCATGGTGGGATCACTCTCACGGAGCCATTTCCCATCAATGCTGCTCAGCATTTTAACCTAGGGTTAGAAGCCAACGGTGAAGGATTTGTAAATGAGTGGTTTTGA 1383 47.43 MAEGFEVYHVPQQSRRDKLRVGIGIGTTNSTNSINHHNNFFPLYDDPSSFISSDFDFHQNPSFQLYHHHNYPPTSAVTAAALHHHLPPLLSEQQPPLSLDLNLQHRYAYHSTLPLQASKFFKPAQQLLHDLFDYAPHNSSDKLLPDSALLDTLEGDIPPAADDGFETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAVKAMFKHFKFLKNAIADQLQFNKQHQPPSYNPYFQRSINNHGAGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQKEANDNNASNNNNDHLSSTNESLLKPDGHNNNNASSSNHDHHPLDLSNTHFFPTHHPHAAAGATAIGGSGNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22598288 22602647 + ClG42_04g0082300.10 Clacu04g0823 247220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0823 460 MobiDBLite consensus disorder prediction 338 387 - -
Clacu04g0823 460 FunFam BEL1-like homeodomain protein 9 270 332 - -
Clacu04g0823 460 Pfam Associated with HOX 115 231 IPR006563 -
Clacu04g0823 460 SUPERFAMILY Homeodomain-like 269 334 IPR009057 -
Clacu04g0823 460 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 372 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu04g0823 460 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677(InterPro)
Clacu04g0823 460 CDD homeodomain 267 328 IPR001356 GO:0003677(InterPro)
Clacu04g0823 460 SMART prehox3 107 232 IPR006563 -
Clacu04g0823 460 MobiDBLite consensus disorder prediction 338 409 - -
Clacu04g0823 460 Gene3D - 270 332 - -
Clacu04g0823 460 SMART HOX_1 267 331 IPR001356 GO:0003677(InterPro)
Clacu04g0823 460 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0823 Clacu-Chr4:22598288 Clacu10g1809 Clacu-Chr10:31768159 5.70E-47 dispersed
Clacu10g2121 Clacu-Chr10:34445374 Clacu04g0823 Clacu-Chr4:22598288 8.90E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47512 PF07526 POX 1.70E-28 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0823 - - - 0.0