Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0842 ATGGAAACCCATCTTCCGCCCCTGTTCTTTCTTCTCATTTTCCTCTCATTCTTCCTCTGCTGCCCTGCCAAGCGCTGCCCAGACTGCGGCCACACGCCGGTGCCGTACCCACTCAGCACAAGCCCAGATTGCGGTGACCCTCTTTACAGAGTCCGGTGCGCCGCCCCCGAACTCTGGTTCGAGTCCGTCAATGGGTCTTTCTATTTGATCACTTCCGTTAATCCGGTGGCACAGAGGCTGATCGTCCGGCCGCCGGGGTTGGCCAAAAACACCTGCGTTTCGTCGGATTTTGGTACCAGTGGTTTTTGGCTCGACACGCGCCTTCCTTTCACCATTTCCGATAGAAACACGGTTTTGCTCTACAACTGTTCGGTAGAAGTTCTCGAAAATAGTTGGAATTGTGCACCTAATAGCATCTGTCATGACTTTATCAGACAGAATCCGGTGGCAATGGCAGCGTGTAAGGTGGCGCCGACGTGCTGTTGGTACACAAGTGGCGGTTCCATGACTGCGTCTAGAATCAGGGTGCGAAAGGAGCGGTGTTCGGCTTATGAATGTTTTGTGAATATGGGTAGTTCTGTTCCGCCGAAGAAGTGGCCGGAACCTGGGGTCGAGATTCAATGGACACCACCCCGAGAGCCGGCATGTCGTGTGGCTACGGACTGCCGGAATTGGGTGAATTCTGCTTGTTCGCCGGACCCTGCAAACGCCGGGCAGAGGAGGTGCTTATGCAAGGTTCCTTTTAAGTGGGATCCTATAAATGGCTTGTGTAGTGGCAACAATTTGAAAATACAGAACAAGATAACTCACAAGAAGCACAAGAAGATGCCTGTTATTCTTGGAGCAATGGCGGGAGTATTTGTAATGGTGATTGGAGGTTCAATCATGTTTATAATTTCCAAAAGACGTCGACAGATTCCGAAGGGGAACGAGCTGAGTTCGAAACAAGTTCGTGAAGTGATTCTAACCGCCAACAGCAGTGGAAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCAAAGGCTACAAACAACTTCTCCAAGGAGAATTTGCTTGGCTCTGGTGGCTATGGAGAGGTCTTCAAAGGCAACTTAGAAGATGGAACCTCAATAGCAGTTAAACGTGCAAAGTTGGGTAGCATGAAGGGTATTGATCAAATCCTGAACGAGGTTCGGATTCTTTGTCAGGTAAACCATCGATACCTCGTTCGTCTACTTGGATGTTGTCTCGAACTTGAGCAACCCCTCTTAATATATGAGTACATCTCGAATGGGAACCTGTTTGATCACCTTCATGGGAATACAAGTTCAAGCAAATGGCCACCGTTGACATTGAGTCGTCGACTCTGCATAGCTTGGCAAACAGCCGAGGGCCTTGCTTATCTCCACACTTCAGCCACACCAAGAATCTATCACCGAGACATAAAGTCGAGCAATATTCTACTGGACGAGAAGTTAAATGCCAAAGTAGCTGATTTTGGGCTGTCTAGATTGGCTATAACTGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTTGACCCAGAATATTACCTTAATTTCCAATTGACAGACAAGAGTGATGTTTATAGTTTTGGAGTTGTCATGTTGGAGCTATTGACTTCGGAGAAAGCCATTGATTTTAATAGGGAAGAGGAAGATGTAAATTTAGTAGTTTATATCAAGAAGATAATCCAAGAAGACAGATTGATGGAGGTTGTTGATCCTGTGATTAAACAGAGAGCAAGCAGAGTTGAAATGGAGATAATCAAGGCATTAGGGTCTTTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAATAGACCTGCCATGAAAGAAGTTGCTGATGAGCTAGCCAATATTATTTCCATTCTTAATAATGAGGTTAGAAATATTGACTAA 1914 46.39 METHLPPLFFLLIFLSFFLCCPAKRCPDCGHTPVPYPLSTSPDCGDPLYRVRCAAPELWFESVNGSFYLITSVNPVAQRLIVRPPGLAKNTCVSSDFGTSGFWLDTRLPFTISDRNTVLLYNCSVEVLENSWNCAPNSICHDFIRQNPVAMAACKVAPTCCWYTSGGSMTASRIRVRKERCSAYECFVNMGSSVPPKKWPEPGVEIQWTPPREPACRVATDCRNWVNSACSPDPANAGQRRCLCKVPFKWDPINGLCSGNNLKIQNKITHKKHKKMPVILGAMAGVFVMVIGGSIMFIISKRRRQIPKGNELSSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGNLEDGTSIAVKRAKLGSMKGIDQILNEVRILCQVNHRYLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLCIAWQTAEGLAYLHTSATPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAITESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIQEDRLMEVVDPVIKQRASRVEMEIIKALGSLAAACLDEKRQNRPAMKEVADELANIISILNNEVRNID 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22758112 22760213 - ClG42_04g0084200.10 Clacu04g0842 247239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0842 637 CDD STKc_IRAK 352 625 - -
Clacu04g0842 637 Gene3D Transferase(Phosphotransferase) domain 1 422 635 - -
Clacu04g0842 637 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 318 421 - -
Clacu04g0842 637 SMART serkin_6 346 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0842 637 SUPERFAMILY Protein kinase-like (PK-like) 329 622 IPR011009 -
Clacu04g0842 637 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524(InterPro)
Clacu04g0842 637 Pfam Protein tyrosine and serine/threonine kinase 349 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0842 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0842 637 ProSiteProfiles Protein kinase domain profile. 346 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0842 637 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Clacu04g0842 637 FunFam Wall-associated receptor kinase-like 20 422 635 - -
Clacu04g0842 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 625 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0842 Clacu-Chr4:22758112 Clacu10g1935 Clacu-Chr10:32948844 2.40E-152 dispersed
Clacu11g0813 Clacu-Chr11:8049981 Clacu04g0842 Clacu-Chr4:22758112 4.20E-186 wgd
Clacu02g2032 Clacu-Chr2:33685249 Clacu04g0842 Clacu-Chr4:22758112 1.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73499 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0842 - - - 0.0