Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0861 ATGGCTTCTCTCTCTCTCCTCTGCTCCATTGCCTTCGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCATGCCACCTTCTATGGCGGCAGTGATGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCCGCCCTCAGTACTGCTCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGTGCTAATGACCCTAGATGGTGCCATCCTGGTAGCCCATCCATTTTCATTACAGCTACCAATTTTTGTCCCCCGAATTTCGCACTGCCAAATGACAATGGCGGTTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCACTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGATTCACTATCAACGGTTTCCGTTACTTCAACTTGGTATTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTTAGCGTCAAAGGATCAAACACCGATTGGATGAGCATGAGCCGTAACTGGGGACAAAATTGGCAATCCAACTCTGTTTTGGTGGGCCAGGCCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACCTCATGGAACGTGGCACCATCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTTTGA 786 53.56 MASLSLLCSIAFASFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVTYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSNTDWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22946884 22948340 + ClG42_04g0086100.10 Clacu04g0861 247258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0861 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Clacu04g0861 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Clacu04g0861 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Clacu04g0861 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Clacu04g0861 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Clacu04g0861 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Clacu04g0861 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
Clacu04g0861 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Clacu04g0861 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576(InterPro)
Clacu04g0861 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Clacu04g0861 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Clacu04g0861 261 Gene3D - 167 259 IPR036749 -
Clacu04g0861 261 Gene3D - 23 163 IPR036908 -
Clacu04g0861 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
Clacu04g0861 261 FunFam Expansin 24 163 - -
Clacu04g0861 261 CDD DPBB_EXPA_N 34 162 - -
Clacu04g0861 261 SMART dpbb_1 70 157 IPR007112 -
Clacu04g0861 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Clacu04g0861 261 FunFam Expansin 167 259 - -
Clacu04g0861 261 PANTHER EXPANSIN-A15 17 259 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0861 Clacu-Chr4:22946884 Clacu07g0524 Clacu-Chr7:6700707 5.20E-106 dispersed
Clacu02g2063 Clacu-Chr2:33926913 Clacu04g0861 Clacu-Chr4:22946884 1.30E-136 wgd
Clacu03g0145 Clacu-Chr3:1596699 Clacu04g0861 Clacu-Chr4:22946884 7.40E-92 wgd
Clacu04g0861 Clacu-Chr4:22946884 Clacu07g0324 Clacu-Chr7:3670316 9.80E-113 wgd
Clacu04g0861 Clacu-Chr4:22946884 Clacu09g2002 Clacu-Chr9:34875415 1.40E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0861 - - - 0.0