Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g0866 | ATGGCTGAGAACGAGGATATCCAACCTCTCGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCAGGAGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACAGGTGTTATGGTTGGAATGGGACAAAAAGATGCTTATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAACGAACTTCGTGTCGCTCCGGAAGAGCATCCAGTTCTTCTCACTGAGGCACCCCTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCACTTCCACATGCTATCCTACGTCTCGATCTTGCTGGCCGTGACCTGACCGATGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACCACAGCCGAGCGTGAAATTGTGAGAGATATGAAGGAAAAACTGGCCTACATTGCCCTTGACTATGAGCAAGAATTAGAAACCTCTAAGACCAGCTCTTCTGTTGAGAAGAGCTATGAGTTGCCTGACGGTCAGGTGATTACCATCGGCGCTGAGCGTTTCCGATGCCCAGAAGTCCTTTTCCAGCCATCCATGATCGGTATGGAAGCTGCCGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCACCTGAAAGGAAATACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGCAGATGTGGATTGCCAAGGCTGAATATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTAA | 1134 | 47.62 | MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23020266 | 23022032 | - | ClG42_04g0086600.10 | Clacu04g0866 | 247263 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g0866 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Clacu04g0866 | 377 | FunFam | Major actin | 260 | 340 | - | - | |
Clacu04g0866 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Clacu04g0866 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
Clacu04g0866 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Clacu04g0866 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Clacu04g0866 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Clacu04g0866 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Clacu04g0866 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Clacu04g0866 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Clacu04g0866 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Clacu04g0866 | 377 | FunFam | Putative actin-related protein 5 | 341 | 369 | - | - | |
Clacu04g0866 | 377 | Gene3D | - | 140 | 340 | - | - | |
Clacu04g0866 | 377 | FunFam | Actin, muscle | 182 | 273 | - | - | |
Clacu04g0866 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
Clacu04g0866 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Clacu04g0866 | 377 | FunFam | Actin, alpha skeletal muscle | 3 | 178 | - | - | |
Clacu04g0866 | 377 | Gene3D | - | 10 | 371 | - | - | |
Clacu04g0866 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
Clacu04g0866 | 377 | PANTHER | ACTIN | 8 | 369 | IPR004000 | GO:0005737(PANTHER) | |
Clacu04g0866 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
Clacu04g0866 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g0866 | Clacu-Chr4:23020266 | Clacu07g0312 | Clacu-Chr7:3510871 | 1.80E-216 | dispersed | |
Clacu10g1739 | Clacu-Chr10:30918767 | Clacu04g0866 | Clacu-Chr4:23020266 | 1.10E-217 | transposed | |
Clacu02g2076 | Clacu-Chr2:34013878 | Clacu04g0866 | Clacu-Chr4:23020266 | 6.20E-217 | wgd | |
Clacu04g0866 | Clacu-Chr4:23020266 | Clacu09g2010 | Clacu-Chr9:34940491 | 4.40E-215 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g0866 | K10355 | - | csv:101214246 | 749.584 |