Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0873 ATGGTATTTCCTTCCATTCCATCTAATTATCTTGATCCAACAACAACCCATCAATGGCATCAGCAAACAGCAAGCCAACAATCTGGGAGTAGCAGTTTTCAGCTGGCGGGGTCACCAGCACCGCCACAAGTTCGGCCGGTGTCTATGGCAGATCGGGCTCGAATGGCGAACCTGCCGGTGCCGGAGACGGCACTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGTGGCGCTCTCAGAAGCGTCCCGGTCGGCGGCGGCTACCGCCGGAATACTAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGTCAACCTACTACTACTGAGGTTTCAGGAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACAAAATGAAGGAGCTGTGGATTCAACTCATCATCCCATTGGGATAGCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACACAACAGTCTCCATTGCTTGTAAATTCAGCTCGGTTGCTTGGAAATGGTGGCATCGAGGCATCGCCGAGCTATAGCATCGTTAGACAGATTCAAAAGAAGATGGAAGCGACGACGAAAATGGAGGAAGATGGGCAACAAGTAGAGATGAATGTTGCAAAGCCATTTTGGGGAGTTGTTGGAGGAAGTGATCATCGCCATTATTGGAGTGGTTTTAATCCTTCATCTTCTTCCCATTCATAA 813 47.36 MVFPSIPSNYLDPTTTHQWHQQTASQQSGSSSFQLAGSPAPPQVRPVSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKRTKSTSKSPVNSQCQPTTTEVSGGEAMRLNYNNAISTQNEGAVDSTHHPIGIANFLGFDQIQWRPQLQLHQTQQSPLLVNSARLLGNGGIEASPSYSIVRQIQKKMEATTKMEEDGQQVEMNVAKPFWGVVGGSDHRHYWSGFNPSSSSHS 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23098820 23100336 - ClG42_04g0087300.10 Clacu04g0873 247270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0873 270 MobiDBLite consensus disorder prediction 22 45 - -
Clacu04g0873 270 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu04g0873 270 MobiDBLite consensus disorder prediction 110 141 - -
Clacu04g0873 270 MobiDBLite consensus disorder prediction 123 141 - -
Clacu04g0873 270 MobiDBLite consensus disorder prediction 22 38 - -
Clacu04g0873 270 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu04g0873 270 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu04g0873 270 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 52 190 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0873 Clacu-Chr4:23098820 Clacu07g1359 Clacu-Chr7:28417270 9.40E-26 dispersed
Clacu10g2073 Clacu-Chr10:34128820 Clacu04g0873 Clacu-Chr4:23098820 3.60E-38 wgd
Clacu02g2084 Clacu-Chr2:34070678 Clacu04g0873 Clacu-Chr4:23098820 2.50E-36 wgd
Clacu03g0162 Clacu-Chr3:1748121 Clacu04g0873 Clacu-Chr4:23098820 9.90E-36 wgd
Clacu04g0873 Clacu-Chr4:23098820 Clacu07g0315 Clacu-Chr7:3531525 3.10E-37 wgd
Clacu04g0873 Clacu-Chr4:23098820 Clacu09g2023 Clacu-Chr9:35028519 3.20E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47515 PF02701 zf-Dof 3.50E-31 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0873 - - - 0.0