Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0882 ATGAACATGAACATGAATATGAGCTCCATCAAAACAGCCTCCAATGGAGTATGGCAAGGTGATAATCCTCTCCACTTTGCTTTCCCTTTATTGATCCTTCAATCCGTCCTCATCCTTCTCCTCACTCGCTTCCTCGCCCTCCTCCTCAAGCCTCTCCGCCAGCCCAAAGTCATCGCCGAAATCGTCGGCGGGATTCTACTGGGTCCATCCGCTTTCGGGCGTAACAAAACTTATTTACACCATGTTTTCCCTCCATGGAGTACTCCCATTCTGGAATCCGTCGCAAGTATTGGTTTACTGTTTTTCCTCTTCCTCGTTGGACTCGAACTCGATTTCTCCTCCATCCGTCGTAGCGGTAGACGAGCTTTCGGAATTGCCTTAGCTGGAATCTCTGTTCCCTTCCTTTCTGGCATCGGTGTTGCCTTCGTCCTTCGTAAAACCGTCGACGGTGCTGATAAAGTCGGTTACGGTCAGTTCATTGTATTCATGGGTGTTGCTCTCTCCATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCCGAACTCAAACTCCTCACTACCCAAGTCGGCGAAACCGCAATGGCCGCTGCCGCATTCAACGACGTTGCCGCTTGGATCCTCCTTGCACTCGCCGTTGCCTTGGCCGGTAACGGCGGTGAAGGCGGATCGCAGAAGAGTCCGTTGGTTTCCGTGTGGGTCTTACTTTCGGGAGCCGGCTTCGTGATTTTCATGATGATGGTCACTCGACCGGGAATGAAATGGGTGGCACGGCGGTGTTCGTACGAACACGACGCCGTGGACGAAGCCTATATCTGTTTGACGTTAGTCGGAGTGTTGGTTTCGGGATTTGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGATTTATATTTGGATTGACGATTCCGAAAGGGGGAAGATTTGCGGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGATGTGGCCAAAATTAAAGGGGGAAAAGCTTGGGGGTTGCTGGCGTTGGTTATTTCGACGGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGCGTTTTTGATACCGGCGAGGGAGGCGCTGGCGTTGGGGCTGCTTATGAACACCAAAGGCTTGGTTGAACTCATTGTGCTCAATATTGGGAAGGAGAAAAAGGTTCTTAACGACGAAGTATTCGCCATATTAGTGTTGATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCGGTTTACAAGCCAGCCCGCGGCGGCTCCACCCCGCCTACCCACCGTAAACTCCGCGACCTCTCCGCCGACGACTCCACTGTCGATGACGAGCTCCGAATCCTGGCTTGCCTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACCCTGACGGAGTCAACTCGCAGCACCAAAAATTCCTCCCTCAAACTCTTCGTGATGCACCTGGTTGAACTCACCGAGAGATCCTCTTCCATAATGATGGTCCAACGCGCCCGCAAAAACGGCTTCCCTTTCTTTGCCCGGTTCCGCAAGGCCAGCGAGTGGCGGGACCAAATGGCTGCGGCCTTTCAGGCCTACAGCCAATTGGGCCGAGTCAAGGTCCGGCCCACTACGGCGGTCTCTTCCTTAGCTACTATGCATGAGGATATCTGCCACGTGGCGGATGATAAGAGGGTCACTATGATCATCTTGCCGTTTCATCGGAATTGGAGGTTGTTTGGCGGTGGCGACGACAAGGAGGAGGTGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCCCCTTGCTCTGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCGCGGCGGCCCAGACGCCTGGGCCTGGGCCCATAGTTGGTGTGGGCCAAAGAATTTGTGTTGTATTTTTTGGTGGGCCTGATGATCGGGAGGCGCTGGAGTTGGGGGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTCAGGTTTCGGCCGACGTCGACGGATGGGATGGAGGGTAGTAATGTCATTTTCCGTCCCATGCATTCGAAATCGGGTGACAACCATTATAGCTTCACTACCACTCCAATCAACCGGGAAAAAGAAAAGGAGCAAGATGATGCAGCATTGGGAGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTACATAGAGAAGGAGGTAAGCAACATGAACATGATAGTTGAAGGGGTGGTGAGCCTCGGAAAGGAAGGCGGTTACGACCTAATCGTGGTCGGGAGGGGTCGGGTTCCCTCGAGCATGGTGGCGAAATTAGCGGACCGACCCGCAGAACATGCCGAGTTGGGGCCAGTAGGGGACATATTGGCTAGCTCCGGGAAGGGAATAGTATCTTCAATACTAATAATTCAACAACATGGAGGAGGTGCTCATGTAGAAGAAACTCCAGTTTTGAAGATAGCACAATCCAATAAGAATGAGCAGCCTTTGTCAACTGATGGAGCTTTAATTGATCATGTATAA 2565 52.4 MNMNMNMSSIKTASNGVWQGDNPLHFAFPLLILQSVLILLLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLHHVFPPWSTPILESVASIGLLFFLFLVGLELDFSSIRRSGRRAFGIALAGISVPFLSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSQKSPLVSVWVLLSGAGFVIFMMMVTRPGMKWVARRCSYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSADDSTVDDELRILACLHSSGNVPSLITLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRLFGGGDDKEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAAAAQTPGPGPIVGVGQRICVVFFGGPDDREALELGGRMAEHPAVKVTVVRFRPTSTDGMEGSNVIFRPMHSKSGDNHYSFTTTPINREKEKEQDDAALGEFRSKWDATVEYIEKEVSNMNMIVEGVVSLGKEGGYDLIVVGRGRVPSSMVAKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGAHVEETPVLKIAQSNKNEQPLSTDGALIDHV 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23177376 23182802 + ClG42_04g0088200.10 Clacu04g0882 247279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0882 854 FunFam Cation/H(+) antiporter 15 30 440 - -
Clacu04g0882 854 Gene3D - 464 797 - -
Clacu04g0882 854 Pfam Sodium/hydrogen exchanger family 40 430 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Clacu04g0882 854 Gene3D - 30 438 IPR038770 -
Clacu04g0882 854 PANTHER CATION/H + ANTIPORTER 8 822 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0882 Clacu-Chr4:23177376 Clacu07g0761 Clacu-Chr7:18715253 6.10E-212 dispersed
Clacu04g0882 Clacu-Chr4:23177376 Clacu07g0488 Clacu-Chr7:6006470 8.20E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0882 K26731 - csv:101207589 1483.77