Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0890 ATGAATCCCCAAATTAGCCAATGGTGTGTCTCAGCCAAGCCTTTTTTTGCTGTAGTGTTCTTGCAGTTTGGTCTTGCAGGAATGGACATTCTGTCTAAAGCAGCTCTGAACCAAGGAATGAGCAACTATGTTCTTGTAGTTTATCGCCATGCAGTTGCCACAATTGTTATAGCTCCTTTTGCACTGATTTTTGACAAGAAAGTCAGACCAAAAATGACAATTCCAGTCTTTGCCAAGTTAATGGTCCTCAGCTTGCTAGAGCCTGTGATTGACCAAAACCTATATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTCCCTGCCATTACCTTTGTAATGGCTTGGATCCTCAGGCTTGAGAAGGTAAGAATCAAAAGCATCAGAAGCCAAGCTAAGATAGTAGGAACCATAGCAACAGTTGGAGGAGCCATGATGATGACACTAATAAAAGGTCCAATTTTGGAGCTATTTTGGGTTAAAGAAAGAGCAAACAATCAACAACAAAGAGGTGAAATCAGCCTTCAACATACAATCAAAGGTTCAATTATGATAACAATTGGCTGCTTCAGTTGGGCCTGTTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTACCCAGCTGAGCTTTCCCTTACGGCTTGGATCTGCCTGCTGGGAACTGCGGAAGGCACTGTTTTGGCTTTGGTAATGGAAAGAGGAAACGCCGCCGTTTGGTCCATTACTTGGGGAACTAAATTGCTCGCCGCTGTCTATAGTGGGATATTTTGCTCAGGACTTGCTTATTACATTCAAGGACTAGTAATGAAAGACAAAGGACCTGTATTTGTGACTGCCTTTAGCCCATTGAGTATGGTCATTGTGGCCATTATGAGTTCCTTCATTTTAGGCGAACGTCTTTACTTTGGAAGGATAGTTGGAGCTGGTGTGATAATTGTGGGACTATACCTTGTTGTTTGGGGCAAAAACAAAGATGGGAATTGTTCCTCAAGTAGTGAAGACTTGAAATTGCCCACACAACAAACAAAAGAAATGGAAGACAACAAGATGGAAAGTTTAACAATTGAAGCAACTAATTCAGTTGATCTAAAGAATAATATTGAGCAAAAATAA 1134 41.01 MNPQISQWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPKMTIPVFAKLMVLSLLEPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVRIKSIRSQAKIVGTIATVGGAMMMTLIKGPILELFWVKERANNQQQRGEISLQHTIKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVLALVMERGNAAVWSITWGTKLLAAVYSGIFCSGLAYYIQGLVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRIVGAGVIIVGLYLVVWGKNKDGNCSSSSEDLKLPTQQTKEMEDNKMESLTIEATNSVDLKNNIEQK 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23251766 23254975 + ClG42_04g0089000.10 Clacu04g0890 247287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0890 377 Pfam EamA-like transporter family 23 153 IPR000620 GO:0016020(InterPro)
Clacu04g0890 377 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020(InterPro)
Clacu04g0890 377 PANTHER WAT1-RELATED PROTEIN 17 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu04g0890 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 331 - -
Clacu04g0890 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0890 Clacu-Chr4:23251766 Clacu07g0305 Clacu-Chr7:3417540 2.30E-110 dispersed
Clacu06g0686 Clacu-Chr6:7920303 Clacu04g0890 Clacu-Chr4:23251766 2.20E-54 transposed
Clacu04g0890 Clacu-Chr4:23251766 Clacu07g0304 Clacu-Chr7:3379851 6.20E-108 wgd
Clacu04g0890 Clacu-Chr4:23251766 Clacu09g2039 Clacu-Chr9:35188666 4.30E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0890 - - - 0.0