Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0900 ATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATACCTCTCCACCCACTAATAACGCTCCTTCTCCCTTCAATAAATACTCCTCATCTGAACCCACTTCTCGAAATTCCACCTCCACCTCGAAGATGGCGTCCTTGCCCTACGCCCATGTTGATTCCAGCCTGCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGATCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCACTTAGGTTTGGATGTCGTAAGAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTACATATCTGAGTGTATCATCGTACAAGACTGTAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCCGAGGAAGCACGGATATCACTATTTCTAGGTGTCACTTCTCACAGCATGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGACGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTCCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATTTACTCTCAGTGCAACATATATGAAGCAGGAGCGAAAAAGGTGGCGTTTAAATATCTAACTGAAAAGGCAGCAGACAAAGAAGAACCCTCAAGTGGTTGCATATGGTCTGATGGAGACTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCAACTGCTGAACACAACTTGTTTCATCCTTCACAACATTACTCTGCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACACATTCTCCAACATTGTACTGGATGCCAAAACATTCCAAGACCAACTGATCTTCCCTTGGTACCTTAG 1134 45.33 MGNAHGHRKHFNHGVNTSPPTNNAPSPFNKYSSSEPTSRNSTSTSKMASLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSTYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKVAFKYLTEKAADKEEPSSGCIWSDGDLFVNGTQSGLLAATAEHNLFHPSQHYSAWTVEPPTDSLKHILQHCTGCQNIPRPTDLPLVP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23333551 23336858 - ClG42_04g0090000.10 Clacu04g0900 247297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0900 377 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Clacu04g0900 377 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Clacu04g0900 377 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Clacu04g0900 377 Gene3D - 50 358 IPR012334 -
Clacu04g0900 377 Pfam Pectate lyase 121 283 IPR002022 -
Clacu04g0900 377 SMART amb_all 77 290 IPR002022 -
Clacu04g0900 377 MobiDBLite consensus disorder prediction 14 45 - -
Clacu04g0900 377 MobiDBLite consensus disorder prediction 1 45 - -
Clacu04g0900 377 ProSiteProfiles Zinc finger integrase-type profile. 324 365 IPR003308 GO:0008270(InterPro)
Clacu04g0900 377 PANTHER PECTATE LYASE 18-RELATED 57 349 IPR045032 GO:0030570(InterPro)
Clacu04g0900 377 SUPERFAMILY Pectin lyase-like 65 372 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0900 Clacu-Chr4:23333551 Clacu08g0933 Clacu-Chr8:19464572 1.90E-40 dispersed
Clacu04g0900 Clacu-Chr4:23333551 Clacu05g2323 Clacu-Chr5:31579650 1.50E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0900 K01728 - csv:101219724 712.22