Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0916 ATGAGTGCTCATGCCGGCAGGCAGAGAGAGTTAAGAGAAACAAGTCACCACGCACAGGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAGGTCAATGGATTAACTAGAAATACGGAGGATGGTCGAAAAAACACTGTTCATGCCCAGGAAATTCTGCAAATACAACAGCAGCAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCCCTCAAGGTTTTGCTTGTCGAAAATGATGATTCCACCCGGCATCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGTTTCTCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAATCGAGGAAGAATATACCTGTAATCATGATGTCTTCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGACAACAACACCGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAACATTGGTGATGGAAGTGATGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCCAATAATGCTCCAATTCTCTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGTTACCTTTGGTAAAGTTGAACTAGGCATGCACAGGAATCTTGATTTACAACTTGAACTCTCTACGGAACATCCAACCAAGCTAGTTAACAGAAAACAGAACATTAGGCTTGAGATCGGGTCCAGTGGATTCAACGAGCAGTTCAACAAAGGACATCTTGACCTCAACTCTGAGAGCCCATCCAGCAAACTGAAGTATGAGGAAACAACTGTTACTGGTCTTGCCACCAATCTTTCTGATTGTAAGATGGATGTTGCTGTGTTTGAGGCGCCAAGCAGCCATCCCAAGACCACAGACGTTAAGAATAAAGATGTTACAGATTCAGAGGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAACGACAGGGAAAGCGGTACAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACGGAAAATGCCGGAAGTAACTCTCCACCTGTTAATGGCTTAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGATCTCATTCAAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGATAGCAATAATATTGACATGGGGTCCACTACTAATAATGCATTTTCCAAGTCCGTAGTTACTAATAACAAGTCAGCAATGGCATCAACAGTCAACTGTTTGTACCCATCGGGAGCTTTCCAACCTGTTAAGAATGACAGTCAATCTGTTCCACAGCAAGCTGATGTCAATAATGTCACAACTACAACAATGCAAACTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACCCGTATGATCCCACTCATCAGCTTGTCCACAATATTCAACGATTGTCATCTGAGCATAATGATTTTTCATTAAAGAAAATATCTGCAGCTCCCACGCATTGTGGGTCAACCAATGTTTTAAATGGTACTTTAGAAGGTAATGCAGCAAACTATAGTGTGAACGGTAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCGAAGTGGGGATGCCAGTGGGAGTGGGAGTGGGAGTGGAAACAAAATGGACCAGAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTTCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCAGAACAGAGACCCCGTGTCAGGGGACAGTTTGTGAGACAAAACACGAGTGAAAACACGAGCAATGCAGGAGATGGCTAA 2340 43.21 MSAHAGRQRELRETSHHAQDGNGSVNNGVSGREQSPVEENELKVNGLTRNTEDGRKNTVHAQEILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCFSGIGLLCKIMNHKSRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIGDGSDDGSGTQSSWTKQAIEVESPRPVSASAWDQKRERPDSTCAQVVHSNADAFANNAPILLTAGCQVQKKQLETVTFGKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLATNLSDCKMDVAVFEAPSSHPKTTDVKNKDVTDSEDFPSLELGLKRLRGVQTTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTENAGSNSPPVNGLEVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMASTVNCLYPSGAFQPVKNDSQSVPQQADVNNVTTTTMQTQSNFVHRESQMQQLCHPYDPTHQLVHNIQRLSSEHNDFSLKKISAAPTHCGSTNVLNGTLEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGIGRSGDASGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23456449 23463093 - ClG42_04g0091600.10 Clacu04g0916 247313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0916 779 MobiDBLite consensus disorder prediction 700 727 - -
Clacu04g0916 779 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
Clacu04g0916 779 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
Clacu04g0916 779 Pfam CCT motif 725 767 IPR010402 GO:0005515(InterPro)
Clacu04g0916 779 MobiDBLite consensus disorder prediction 213 230 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 668 692 - -
Clacu04g0916 779 ProSiteProfiles CCT domain profile. 725 767 IPR010402 GO:0005515(InterPro)
Clacu04g0916 779 MobiDBLite consensus disorder prediction 459 541 - -
Clacu04g0916 779 CDD psREC_PRR 91 194 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 18 34 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 668 779 - -
Clacu04g0916 779 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
Clacu04g0916 779 MobiDBLite consensus disorder prediction 474 541 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 213 295 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 1 17 - -
Clacu04g0916 779 SUPERFAMILY CheY-like 87 213 IPR011006 -
Clacu04g0916 779 Gene3D - 88 336 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 762 779 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 735 750 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 1 55 - -
Clacu04g0916 779 MobiDBLite consensus disorder prediction 261 276 - -
Clacu04g0916 779 PANTHER TWO-COMPONENT RESPONSE REGULATOR 75 356 IPR045279 GO:0009736(InterPro)
Clacu04g0916 779 FunFam Two-component response regulator-like PRR37 89 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0009 Clacu-Chr1:153977 Clacu04g0916 Clacu-Chr4:23456449 1.10E-44 dispersed
Clacu04g0916 Clacu-Chr4:23456449 Clacu04g1268 Clacu-Chr4:26772822 2.00E-12 dispersed
Clacu09g1682 Clacu-Chr9:30012401 Clacu04g0916 Clacu-Chr4:23456449 3.20E-06 dispersed
Clacu04g0916 Clacu-Chr4:23456449 Clacu06g1305 Clacu-Chr6:23960247 9.40E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47518 PF00072 Response_reg 2.70E-20 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0916 K12129 - csv:101210765 1352.81