Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0924 ATGTTGGACCTCAATCTCTGTATTCTCTCCGGAGATTCCTCTTCCGGTGGAACTGGTTTAAATCCCTTCAATCTTTCCGCTCCCGGAGTTCAGAGTCCCATTTCATCCTCCGTCGTCAACGCCGATCAGTCCAACGTCATTGGCGATTACGGCTCCTCTTCCAACGCTGATTGTGGGTTCACTTTCTCTTTCAGCATCCTCAACAACAGCAACGACGATCAACGCGGCCGGACTGTCGCCGGCAGGTTTTCCTCCGACGTCTATTCACAGAGGAAATGGATGGTTCAACAGTCCGTTCATCCGGCGAAAAAGGGCCGGCGAGGCCCGAAATCAAGAAGCTCCGAGTATCGTGGGGTTACGTATTATCGAAGAACAGGGAGATGGGAGTCGCATATCTGGGATAGCGGGAAACAAGTCTATTTGGGTGGTTTTGATACTGCCCATTCTGCAGCCAGGGCTTATGATCGAGCTGCAATAAAGTTTCGAGGGGTTCATGCTGATATAAATTTCAATATCAGTGACTACAGTGAAGAGATTAAACAGATGAGTAATTTTAGTAAAGAGGAGTTTGTTCATATTCTTCGAAGGCAGAGCACTGGATTTTCAAGAGGGAGTTCTAAATACAGAGGGGTTACTCTGCACAAGTGTGGGAGATGGGAGGCTCGAATGGGACAGTTCTTGGGGAAGAAGTATGTGTATCTTGGGCTGTTTGATAGTGAGATAGAGGCTGCAAGAGCATATGATAAGGCTGCCATAAAATATAATGGAAGGGAAGCTGTTACCAATTTTGATCAGAGTTCCTATGAGATGGAGATTGCTTTTGAATCTCAAAACCAAGACATGGGTGATATTGACTTGAACCTGGGCATTGCCCCTCCTTGTCCATCTGAAGACCAAAAGGACAACCTGAATGTCTGTGCTACAAATTTCTGTAGCTTAAATAAATCAGATTCTGATAGATCTGAGTTGATAATGCTTGAAAACCATTCTTCTGTGGCTGTGAGAGCACATCCTTCTTTTATGAGTTGTCCCAATTTCTTTCCTACCTACCAGGGAAGAGCAATGGAGAAGATAATGGAAGTTGAAACTTTACCGAACTGGGGGTGGCGCCAGATCCCAATCTCTTACGGCGGAGCAACTTCCGTCCCTTTCTTCTCCACTGCAGCATCATCAGGATTCCCTTCTTCTCCGGCTGCCCAGCTTCCTCCCCATCTCCTTCGTCCAGCGCCGCCGTTCCTCCGCTACCATTTTCCCCCCACTAACAGCGTTCCTCATTTCTACTGCAGCACCTGA 1293 47.25 MLDLNLCILSGDSSSGGTGLNPFNLSAPGVQSPISSSVVNADQSNVIGDYGSSSNADCGFTFSFSILNNSNDDQRGRTVAGRFSSDVYSQRKWMVQQSVHPAKKGRRGPKSRSSEYRGVTYYRRTGRWESHIWDSGKQVYLGGFDTAHSAARAYDRAAIKFRGVHADINFNISDYSEEIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKYNGREAVTNFDQSSYEMEIAFESQNQDMGDIDLNLGIAPPCPSEDQKDNLNVCATNFCSLNKSDSDRSELIMLENHSSVAVRAHPSFMSCPNFFPTYQGRAMEKIMEVETLPNWGWRQIPISYGGATSVPFFSTAASSGFPSSPAAQLPPHLLRPAPPFLRYHFPPTNSVPHFYCST 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23529133 23533673 + ClG42_04g0092400.10 Clacu04g0924 247321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0924 430 Gene3D AP2/ERF domain 206 265 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 Pfam AP2 domain 206 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 Pfam AP2 domain 115 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 CDD AP2 206 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 ProSiteProfiles AP2/ERF domain profile. 115 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 PRINTS Ethylene responsive element binding protein signature 246 266 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 FunFam AP2-like ethylene-responsive transcription factor 206 266 - -
Clacu04g0924 430 FunFam AP2-like ethylene-responsive transcription factor 114 173 - -
Clacu04g0924 430 SMART rav1_2 207 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 SMART rav1_2 115 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 SUPERFAMILY DNA-binding domain 206 265 IPR016177 GO:0003677(InterPro)
Clacu04g0924 430 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 74 298 - -
Clacu04g0924 430 CDD AP2 114 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g0924 430 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0924 Clacu-Chr4:23529133 Clacu07g1407 Clacu-Chr7:28901855 3.80E-45 dispersed
Clacu10g2032 Clacu-Chr10:33797590 Clacu04g0924 Clacu-Chr4:23529133 1.80E-96 wgd
Clacu02g2134 Clacu-Chr2:34503275 Clacu04g0924 Clacu-Chr4:23529133 2.20E-86 wgd
Clacu02g1418 Clacu-Chr2:27513474 Clacu04g0924 Clacu-Chr4:23529133 5.80E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47519 PF00847 AP2 1.40E-10 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0924 K09284 - csv:101211008 697.582