Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0935 ATGATGTCTGGTATTGAATTTTCTGTTTCTTCTAATTCTAATGGAGAATTTGCTGATCATCAACAACAAAATTCTCAACTTTATCATCATCTTCCTCATAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTTTTCCTCCTCCTACTCTCCCCAAGAAGAAGAGAAACTTGCCAGGAAAACCAGATCCAGATGCTGAGGTAATTGCTTTATCTCCCAACACTTTAATGGCTACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAGGCAAAGAAGCAATAAAGAAGTAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCCCTTGGGGACCTAACTGGAATTAAAAAACATTTCAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTATTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCTGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATAATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTGAATCATCACCTGCTTTCCCCCAATTTCTTCCACCCTATAATAATCTCTACCTAATCTCAAATCAAATTTTGAGTTTGAATAACAAAAACAATGCTTCAGAAACAGCCACCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAACAACAAGCTTATAACTTGCCATCGTTTTGCTCCGGTGGCGGTGGCGGAGGGATGTCGGCGACGGCACTGCTGCTGAAAGCGGCGCAATTGGGGTCGACAAAGAGTAAAGATAACTCATTTTCTTCAGGGAGTAACAGTGTGGGAGTAGTTATGAGTTCATCTCCAAATAATATTTCATTTGAGAGTGGTAATTGTAATTATTATGGGGGAAAGGGAGATGGGTTGATGGATTTTTTTGGGAGGAAGGAGGGAGAAGGGAATGATCATCAGTTGATTATTCCATTAATGGAGATGACCAAATTTGCTAACTCTATGAGCTCCGAGATGGGTTTGAGCCAATTCATTGGCAATAATAATCCGGGATAA 1275 38.51 MMSGIEFSVSSNSNGEFADHQQQNSQLYHHLPHNPNPNPNPNLDSSFPPPTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNNSINQSLFNSQLQDHNFESSPAFPQFLPPYNNLYLISNQILSLNNKNNASETATMNLTLSSSANKQQQAYNLPSFCSGGGGGGMSATALLLKAAQLGSTKSKDNSFSSGSNSVGVVMSSSPNNISFESGNCNYYGGKGDGLMDFFGRKEGEGNDHQLIIPLMEMTKFANSMSSEMGLSQFIGNNNPG 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23612608 23616045 + ClG42_04g0093500.10 Clacu04g0935 247332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0935 424 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Clacu04g0935 424 SUPERFAMILY beta-beta-alpha zinc fingers 82 180 IPR036236 -
Clacu04g0935 424 MobiDBLite consensus disorder prediction 1 68 - -
Clacu04g0935 424 MobiDBLite consensus disorder prediction 1 33 - -
Clacu04g0935 424 FunFam protein indeterminate-domain 12-like 62 131 - -
Clacu04g0935 424 Gene3D Classic Zinc Finger 139 217 - -
Clacu04g0935 424 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 121 155 - -
Clacu04g0935 424 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 159 183 - -
Clacu04g0935 424 Gene3D Classic Zinc Finger 63 136 - -
Clacu04g0935 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 348 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu04g0935 424 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 186 224 - -
Clacu04g0935 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Clacu04g0935 424 MobiDBLite consensus disorder prediction 34 56 - -
Clacu04g0935 424 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Clacu04g0935 424 SMART c2h2final6 160 180 IPR013087 -
Clacu04g0935 424 SMART c2h2final6 83 105 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0232 Clacu-Chr3:2645114 Clacu04g0935 Clacu-Chr4:23612608 7.50E-80 dispersed
Clacu04g0935 Clacu-Chr4:23612608 Clacu09g0073 Clacu-Chr9:709407 3.00E-87 dispersed
Clacu02g0239 Clacu-Chr2:2255961 Clacu04g0935 Clacu-Chr4:23612608 3.80E-85 transposed
Clacu03g1741 Clacu-Chr3:31189813 Clacu04g0935 Clacu-Chr4:23612608 4.40E-86 transposed
Clacu10g2010 Clacu-Chr10:33578026 Clacu04g0935 Clacu-Chr4:23612608 1.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47521 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0935 K25870 - csv:101221389 595.89