Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0939 ATGAAGTTTCGTGGTCTTCTTTCTAATTGTTGTTACTCTCCATCGCCGACTGCCACGGAAAATAGCCGCCACGATAGACTAGACAATGAGAGTTTTCGTGTGTACTCTTATAACGAGCTTAAATCGGCCACCAATGGATTTAGTGGAGCGAATAAGGTTGGAGAGGGTGGATTCGGCATTGTTTACAAGGGTCGGCTTCGAGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATAGCTGAGTTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTGTTATGTTGATGGAAGTAACAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCACATGCTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGTTGGCTAGCCAGAAAGGAAATTTTAATTGGAGTTGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGAGCCGCATATAGTTCATAGAGATATAAAATCCAGCAATATACTACTCGACCATAATTTTACACCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACCATTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCAGAATATGCTGTGAGCGGCCATTTGACGCGAAAATCGGATGTCTATAGCTTCGGAGTGTTGTTGTTGGAGATTGTCAGTGGAAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAGCACCATTTGGTTCAAAAGGTATGGGAACATTACAAGGCGAACGAGCTAGTAAAATTGATAGATCCCATGCTTGACATAGACTTCCGCAAAGAAGAAGCTGTTCGGTTTATGAAGATTGGTCTACTCTGTGTGCAAGAAAACACAATGAAACGACCACGAATGTCTCTTGCTTTAAGCATGTTGATGAAAGAAACCGACGTTAATGATCATAATATTTCACAACCTGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCGTCAACCAGCATTTTCTCCAAGGTTTCCACAGGAAATAGCTTGTAA 1095 41.28 MKFRGLLSNCCYSPSPTATENSRHDRLDNESFRVYSYNELKSATNGFSGANKVGEGGFGIVYKGRLRDGRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGCYVDGSNRYLVYDYMENNSLAHALQGVRENRMRLSWLARKEILIGVARGLAYLHEEVEPHIVHRDIKSSNILLDHNFTPKVADFGLAKLLRENHSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQKVWEHYKANELVKLIDPMLDIDFRKEEAVRFMKIGLLCVQENTMKRPRMSLALSMLMKETDVNDHNISQPGHIIDFMDIKMGKGNSSTSIFSKVSTGNSL 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23639879 23641460 + ClG42_04g0093900.10 Clacu04g0939 247336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0939 364 CDD STKc_IRAK 53 322 - -
Clacu04g0939 364 Gene3D Phosphorylase Kinase; domain 1 17 124 - -
Clacu04g0939 364 SUPERFAMILY Protein kinase-like (PK-like) 27 320 IPR011009 -
Clacu04g0939 364 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 23 356 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Clacu04g0939 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0939 364 FunFam Serine/threonine-protein kinase receptor 17 124 - -
Clacu04g0939 364 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Clacu04g0939 364 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 332 - -
Clacu04g0939 364 SMART serkin_6 47 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0939 364 Pfam Protein kinase domain 51 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0939 364 Gene3D Transferase(Phosphotransferase) domain 1 125 335 - -
Clacu04g0939 364 ProSiteProfiles Protein kinase domain profile. 47 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0939 Clacu-Chr4:23639879 Clacu07g1029 Clacu-Chr7:24717165 8.60E-91 dispersed
Clacu04g0939 Clacu-Chr4:23639879 Clacu07g1066 Clacu-Chr7:25214318 7.80E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73504 PF00069 Pkinase 8.70E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0939 - - - 0.0