Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0941 ATGTCTAAGGATGTTGAACCTGGGTTTTCCGCCGGCGACTACCTCGACCAGCCTCCGGCTCCGTTCTTCGACGCCGACGAGCTTTTGCGGTGGTCCTTTTACAGGGCCGTTATTGCTGAGTTCGTTGCTACCCTTTTGTTTCTGTACGTTGGAGTGCTCACTGTGATTGGAAACCAGAGTCAGTCTTCTGCCGCCGTATGCGCCGGCGTTGGTGTTCTGGGTATTGCTTGGGCTTTCGGCGGCACCATCTTTGTTCTCGTTTACTGCACCGCCGGCATTTCTGGCAAGTTCTGCTGCTCTCTCTCCCCTTTTGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGCACTATACATAATGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCGTTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCCGGTGCTGGCCTCGCCGCTGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAAAGAAAAGCTAGAGATTCCCATGTTCCTGTTCTAGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTAGCCACGATTCCGGTCACAGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCGCAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAGAACTTCCTCAATTTAA 864 51.74 MSKDVEPGFSAGDYLDQPPAPFFDADELLRWSFYRAVIAEFVATLLFLYVGVLTVIGNQSQSSAAVCAGVGVLGIAWAFGGTIFVLVYCTAGISGKFCCSLSPFGHINPAVTFGLFLGRKVSLVRAALYIMAQCLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNRKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRTSSI 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23657585 23660517 - ClG42_04g0094100.10 Clacu04g0941 247338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0941 287 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0941 287 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0941 287 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0941 287 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0941 287 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0941 287 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0941 287 FunFam Probable aquaporin PIP2-8 20 287 - -
Clacu04g0941 287 SUPERFAMILY Aquaporin-like 27 272 IPR023271 -
Clacu04g0941 287 CDD MIP 35 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0941 287 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Clacu04g0941 287 Gene3D Glycerol uptake facilitator protein. 20 287 IPR023271 -
Clacu04g0941 287 Pfam Major intrinsic protein 28 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0941 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Clacu04g0941 287 NCBIfam MIP family channel protein 39 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0941 Clacu-Chr4:23657585 Clacu04g0945 Clacu-Chr4:23687465 1.70E-118 dispersed
Clacu04g0941 Clacu-Chr4:23657585 Clacu04g0943 Clacu-Chr4:23671360 2.50E-117 proximal
Clacu10g2005 Clacu-Chr10:33544530 Clacu04g0941 Clacu-Chr4:23657585 1.20E-108 wgd
Clacu02g2170 Clacu-Chr2:34829824 Clacu04g0941 Clacu-Chr4:23657585 1.80E-112 wgd
Clacu04g0941 Clacu-Chr4:23657585 Clacu08g0897 Clacu-Chr8:19070111 4.50E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0941 K09872 - csv:101215842 520.39