Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0943 ATGGCCAAGGACTCTGATGCCGGAGGGTTCGCCGCCAAGGACTACCACGACCCTCCACCTGCTCCTTTCATCGACGCCAACGAGTTCACTCAGTGGTCGTTTTACAGAGCCATCATCGCTGAGTTCATAGCCACTCTCCTCTTCTTGTACGTCACTGTTCTTACCGTCATTGGCTACAGTAGCCAGTCCGACATCAAAAACGGCGGCCAAATCTGCGGCGGTGTTGGCATTCTCGGCATCGCTTGGGCTTTCGGTGGAATGATCTTCGTTCTCGTCTACTGTACCGCTGGAATTTCCGGTGGGCATATCAATCCGGCGGTGACATTTGGGCTGTTTTTGGCTCGGAAAGTGTCGTTGGTGAGAGCTGTTTTGTACATGGTTGCTCAATGTCTTGGTGCCATTTGTGGATGTGCTTTGGTCAAATCGTTTCAAAAGGGTCTTTACAATCGCTACGGCGGTGGAGCCAATTCTCTCGCCGACGGCTACAGTACTGGCACTGGCTTAGGCGCTGAGATTATCGGAACTTTCGTTCTTGTTTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGTGCTAGAGATTCTCACGTTCCTGTTCTAGCTCCACTGCCAATTGGGTTTGCTGTGTTTATGGTTCATCTAGCCACCATTCCGGTTACCGGCACCGGTATTAACCCCGCTCGAAGCTTCGGTGCTGCAGTTGTCTTCAACCAGAGCAAGCCATGGAATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCAATTGCTGCATTTTATCACCAATTCATTTTGAGAGCTGGAGCTGTTAAAGCTTTGGGATCATTCAGGAGTACACACAGTGTTTGA 855 50.18 MAKDSDAGGFAAKDYHDPPPAPFIDANEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYNRYGGGANSLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVFNQSKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTHSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23671360 23672503 - ClG42_04g0094300.10 Clacu04g0943 247340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0943 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0943 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0943 284 NCBIfam MIP family channel protein 40 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0943 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Clacu04g0943 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Clacu04g0943 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Clacu04g0943 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Clacu04g0943 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Clacu04g0943 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0943 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0943 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0943 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0943 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0943 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0943 Clacu-Chr4:23671360 Clacu04g0945 Clacu-Chr4:23687465 2.30E-147 dispersed
Clacu04g0941 Clacu-Chr4:23657585 Clacu04g0943 Clacu-Chr4:23671360 2.50E-117 proximal
Clacu04g0943 Clacu-Chr4:23671360 Clacu04g0944 Clacu-Chr4:23681998 7.60E-143 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0943 K09872 - csv:101214884 549.28