Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0944 ATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACACATAAATCCGGCTGTGACTTTTGGGCTATTTTTGGCTCGGAAGGTATCATTAGTGAGAGCCGTTTTGTACATGGTGGCTCAGTGTCTAGGCGCCATTTGTGGCTGTGCATTGGTGAAGGCATTCCAAAACGCTCACTACAACAAGTACGGCGGAGGAGCCAACTCGCTCTCCGACGGCTATAGCACCGGCACCGGATTAGCCGCCGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACCGATCCCAAGAGAAATGCCAGAGACTCTCACGTCCCCGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCATGGTTCACTTGGCCACGATTCCGATCACCGGTACGGGCATCAACCCGGCTAGAAGCTTTGGAGCTGCAGTAGTGTTCAACCAATCCAAGCCATGGGATGATCAATGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCCATAGCTGCAATTTATCACCAATTCATATTAAGAGCAGGAGCAGCCAAAGCTCTAGGATCATTCTCAACCTCCTGA 855 49.59 MSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKAFQNAHYNKYGGGANSLSDGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNQSKPWDDQWIFWVGPFIGAAIAAIYHQFILRAGAAKALGSFSTS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23681998 23684013 + ClG42_04g0094400.10 Clacu04g0944 247341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0944 284 MobiDBLite consensus disorder prediction 1 21 - -
Clacu04g0944 284 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Clacu04g0944 284 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 FunFam Probable aquaporin PIP1-2 24 284 - -
Clacu04g0944 284 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0944 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Clacu04g0944 284 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Clacu04g0944 284 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0944 Clacu-Chr4:23681998 Clacu05g2291 Clacu-Chr5:31293989 1.30E-131 dispersed
Clacu04g0943 Clacu-Chr4:23671360 Clacu04g0944 Clacu-Chr4:23681998 7.60E-143 tandem
Clacu04g0944 Clacu-Chr4:23681998 Clacu04g0945 Clacu-Chr4:23687465 4.10E-149 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0944 K09872 - csv:101216085 532.332