Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0945 ATGTCTAAGGATCTCGAAGCCGGAGGCTTCGCCGCCAAGGACTACCAAGACCCACCTCCAGCTCCATTAATCGACGCCGAAGAGTTCGCTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACTCTTTTGTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTAGCCAATCCGACACCAAAAACGGCGGCCAAATCTGCGGCGGCGTCGGAATTCTCGGCATCGCTTGGGCATTCGGCGGCATGATCTTCGTTCTCGTTTACTGCACTGCTGGAATTTCCGGAGGACATATTAATCCAGCGGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTGTCTTTAATTCGAGCAATCCTTTACATGGTGGCTCAATGTTTAGGCGCCATTTGTGGGTGTGCATTGGTGAAATCATTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCTCTCGCCGATGGGTACGGCACCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGACCCGAAGAGAAACGCTAGAGATTCTCACGTTCCAGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACTGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACTGCCGTATGA 855 51.46 MSKDLEAGGFAAKDYQDPPPAPLIDAEEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYGTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23687465 23688600 + ClG42_04g0094500.10 Clacu04g0945 247342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0945 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Clacu04g0945 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0945 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Clacu04g0945 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Clacu04g0945 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0945 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0945 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0945 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0945 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0945 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0945 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Clacu04g0945 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Clacu04g0945 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0945 284 NCBIfam MIP family channel protein 40 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2170 Clacu-Chr2:34829824 Clacu04g0945 Clacu-Chr4:23687465 2.20E-134 dispersed
Clacu04g0565 Clacu-Chr4:18985130 Clacu04g0945 Clacu-Chr4:23687465 1.10E-11 dispersed
Clacu04g0941 Clacu-Chr4:23657585 Clacu04g0945 Clacu-Chr4:23687465 1.70E-118 dispersed
Clacu04g0943 Clacu-Chr4:23671360 Clacu04g0945 Clacu-Chr4:23687465 2.30E-147 dispersed
Clacu04g0945 Clacu-Chr4:23687465 Clacu05g2291 Clacu-Chr5:31293989 1.20E-132 dispersed
Clacu04g0944 Clacu-Chr4:23681998 Clacu04g0945 Clacu-Chr4:23687465 4.10E-149 tandem
Clacu04g0945 Clacu-Chr4:23687465 Clacu04g0946 Clacu-Chr4:23692793 5.10E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0945 K09872 - csv:101215366 542.732