Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0946 ATGTCTAACAATGTCAAAGACTACCAAGACCCACCGCCGGCCCCCTTCATCGACGCCGGCGAGTTCATTCAATGGTCGTTTTACAGAGCCATTATCGCCGAGTTCGTCGCCACCCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATGCCAGCCTCTCCGCCGCCAATATCTGCGGCGGCGTCGGACTTTTGGGCATTTCCTGGGCTGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGTGGGCATATTAATCCGGCGGTGACGTTCGGGATGTTGTTAGCTCGAAAAATCTCTCTAATCAGAGCCTTTTTTTACATTGTGGCTCAATGTTTGGGAGCCATTTGTGGGTGTGCATTGGCTAAATCATTACAGAAGACTTATTACGTTCAATTCCAAGGTGCAGCCAATATAGTCGCCGATGGGTACAGCATCGGCACCGGCTTAGCCGCGGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCTCACATTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGATTATGGTTCATTTAGCCACCATTCCCATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGCGCTGCAGTGATCTATAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGACCATTCATTGGAGCTGCCATTGCTGCAACTTATCATGTAGTTATAATAAGGGCAGGGACAATTAAAGCTCTTGTTTCCTTCAGAAGTTCCTCTGCTCTATAA 822 49.51 MSNNVKDYQDPPPAPFIDAGEFIQWSFYRAIIAEFVATLLFLYILVLTVIGNASLSAANICGGVGLLGISWAVGGMIFVLVYCTAGISGGHINPAVTFGMLLARKISLIRAFFYIVAQCLGAICGCALAKSLQKTYYVQFQGAANIVADGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVIMVHLATIPITGTGINPARSFGAAVIYNKAKAWDHHWIFWVGPFIGAAIAATYHVVIIRAGTIKALVSFRSSSAL 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23692793 23693984 + ClG42_04g0094600.10 Clacu04g0946 247343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0946 273 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 269 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Clacu04g0946 273 CDD MIP 29 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Clacu04g0946 273 Pfam Major intrinsic protein 23 252 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 Gene3D Glycerol uptake facilitator protein. 14 273 IPR023271 -
Clacu04g0946 273 FunFam Probable aquaporin PIP1-2 14 271 - -
Clacu04g0946 273 NCBIfam MIP family channel protein 33 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu04g0946 273 SUPERFAMILY Aquaporin-like 21 257 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0946 Clacu-Chr4:23692793 Clacu10g2005 Clacu-Chr10:33544530 1.60E-113 dispersed
Clacu04g0945 Clacu-Chr4:23687465 Clacu04g0946 Clacu-Chr4:23692793 5.10E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0946 K09872 - csv:101215604 501.13