Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g0949 | ATGCCTACTTCTAGTAGATGGAGATCAGTGACCACAGTAAGATTCGAAGACGAAGAACTCGAAAATGGCGAAGCAGGGAGGAGGAGAAAGAGAGGAAGAAGGAAATGTGAGGGAATGTTTTGTGATTCAGATCAAGATTATGATGTGGTGAAGGGAATGGTACTAGATCCAAATCTGCCCATACTGAACAAATGGAATAGGGTTTTTCTGGTGGCTTGTTTGGTGTCACTATTTGTGGACCCTGTGTTCTTCTTCTTGCCGGTGGTGAACGTGGAGGAGGGGTGCGTGGAAATGAGCGGAGCGTTGGGGGTGGCGTTGACGGTGGTCCGGTCGATTGCGGATGTGTTCTACATAACACACATACTGGTTAGGTTTAGGACAGCTTACGTAGCTCCCTCGTCCAGGATCTTTGGAAGAGGAGAGCTCGTGATTCACCCTTCTAAGATTGCTGCTAACTATCTCGTTTTCGAGTTTTGGCTTCATTTTGTTGCTGCATTACCTCTTCCACAGGCATTCGTATGGGTTGCAATACCAAAAATGAGGGCGTGGAGTTACTTTGTTCGTTTCTCCATTTTGTTACAATACCTTCTGAGGTTGTATCTCATCTTCCCTTTATCTGATCAAATCATTAAGGCCACTGGAGTTTTGATGAAAACAGCTTGGGTTGGAGCTGGTTATAACCTAATGCTCTTTATGCTAGCAAGCCATGTTTTGGGATCATGTTGGTACCTTTTATCCATAGGAAGACAAATGGAATGCTGGAAAAAAGTGTGCAATTTGGGGCAGCATTTGGATTGCCAATATGAGCTTTTTTATTGTAAAGCTTTACAGAGAGATTCAAATAAAGCTGCTTGGTTTCAACATTATCAAGCAACCAATATTTCAAATTTATGTCATCCAAGTGCCACCAATTTCTTTCACTTTGGGATCTTTTCTGATTCTTTTGCTTCAACTTCTTCCCCCTTCTTCACTAGGTACTTGTATTGTTTCTGGTGGGGATTGAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAAATCAATTTCGCCATTGTGATTGCCATTGTTGGGTTGGTGCTTTTCGCTCTTCTTATTGGAAATATGCAAACTTATCTCCAATCAACGACATTAAGACTAGAAGAATGGAGAGTAAGAAGAAGAGACACGGAGCAATGGATGCAACACAGACAATTACCAAATCAATTAAAACAAAGCGTAAGAAATTACGAACAATTCCGATGGATGGCAACTCACGGCGTCGACGAACAACACATTCTAAAATCCCTTCCTCTCGATCTCCGACGACAAATCAAACGCCATCTCTGTCTCGATCTCCTCCGTCAAGTTCCTCTGTTCGACGAAATGGAAGAAAGAATGTTAGACGCAATTTGCGAGCGATTAAAACCCTGTTTGAGCACTTCCAACACTTGTTTACTTCGAGAAGGCGACCCAGTTAATGAAATGTTGTTTATAATCCGTGGCCATCTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTTTTCAATTCGAGCCGTCTTGGGCCGAGTGATTTCTGCGGTGAGGAGTTGCTTCCTTGGGCGTTGGATGATCCTGGGGCGGCAGCGGTGTTGCCGTCTTCCACGAGGACGGTGACGGCGGTGACGGAGGTGGAAGGGTTTGCGCTTGTGGCGGAGGATTTGAAGTTTGTGGCAGCGCAATTTCGGAGGCTGCATAGTAAGCAGATTAGGTGTACTTTTAGGTTTCACTCGCAGCAGTGGAGGACGTGGGCGGCGTGTTTTATTCAGGCGGCGTGGGTTAGGTATAAGCGGCGGCAGAAGAAGGAAGGTGAGATTAATGTTGTGAGGAAGATGAGTGTTGTTCGTCATAGGTCGTTGGTGAAGCCGCTTCAAATTGATTTCTCGGTGGAAGATAGATGA | 1938 | 45.1 | MPTSSRWRSVTTVRFEDEELENGEAGRRRKRGRRKCEGMFCDSDQDYDVVKGMVLDPNLPILNKWNRVFLVACLVSLFVDPVFFFLPVVNVEEGCVEMSGALGVALTVVRSIADVFYITHILVRFRTAYVAPSSRIFGRGELVIHPSKIAANYLVFEFWLHFVAALPLPQAFVWVAIPKMRAWSYFVRFSILLQYLLRLYLIFPLSDQIIKATGVLMKTAWVGAGYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCNLGQHLDCQYELFYCKALQRDSNKAAWFQHYQATNISNLCHPSATNFFHFGIFSDSFASTSSPFFTRYLYCFWWGLRNLSSLGQNLLTSSNVGEINFAIVIAIVGLVLFALLIGNMQTYLQSTTLRLEEWRVRRRDTEQWMQHRQLPNQLKQSVRNYEQFRWMATHGVDEQHILKSLPLDLRRQIKRHLCLDLLRQVPLFDEMEERMLDAICERLKPCLSTSNTCLLREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALDDPGAAAVLPSSTRTVTAVTEVEGFALVAEDLKFVAAQFRRLHSKQIRCTFRFHSQQWRTWAACFIQAAWVRYKRRQKKEGEINVVRKMSVVRHRSLVKPLQIDFSVEDR | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23713646 | 23717727 | + | ClG42_04g0094900.10 | Clacu04g0949 | 247346 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g0949 | 645 | CDD | CAP_ED | 457 | 577 | IPR000595 | - | |
Clacu04g0949 | 645 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 44 | 618 | - | - | |
Clacu04g0949 | 645 | SUPERFAMILY | cAMP-binding domain-like | 387 | 578 | IPR018490 | - | |
Clacu04g0949 | 645 | Pfam | Ion transport protein | 67 | 384 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu04g0949 | 645 | Gene3D | Helix hairpin bin | 385 | 448 | - | - | |
Clacu04g0949 | 645 | SUPERFAMILY | Voltage-gated potassium channels | 64 | 379 | - | - | |
Clacu04g0949 | 645 | FunFam | Cyclic nucleotide-gated ion channel 1 | 384 | 448 | - | - | |
Clacu04g0949 | 645 | FunFam | Cyclic nucleotide-gated ion channel 1 | 455 | 574 | - | - | |
Clacu04g0949 | 645 | PRINTS | EAG/ELK/ERG potassium channel family signature | 121 | 130 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu04g0949 | 645 | PRINTS | EAG/ELK/ERG potassium channel family signature | 233 | 243 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu04g0949 | 645 | PRINTS | EAG/ELK/ERG potassium channel family signature | 370 | 379 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu04g0949 | 645 | PRINTS | EAG/ELK/ERG potassium channel family signature | 352 | 363 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu04g0949 | 645 | PRINTS | EAG/ELK/ERG potassium channel family signature | 420 | 427 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Clacu04g0949 | 645 | SMART | cnmp_10 | 457 | 589 | IPR000595 | - | |
Clacu04g0949 | 645 | Gene3D | - | 69 | 381 | - | - | |
Clacu04g0949 | 645 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 457 | 543 | IPR000595 | - | |
Clacu04g0949 | 645 | Gene3D | Jelly Rolls | 455 | 576 | IPR014710 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2179 | Clacu-Chr2:34961923 | Clacu04g0949 | Clacu-Chr4:23713646 | 1.30E-215 | dispersed | |
Clacu04g0949 | Clacu-Chr4:23713646 | Clacu06g1389 | Clacu-Chr6:24806474 | 3.10E-176 | dispersed | |
Clacu04g0949 | Clacu-Chr4:23713646 | Clacu10g1427 | Clacu-Chr10:27418634 | 1.10E-173 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g0949 | K05391 | - | csv:101221856 | 1050.81 |