Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0958 ATGGCGGAATCCGGTCACCAAAATGGCTTCGAGTTTTGCATCGGCGGCCGGAACAATATCAACCATGATCCATTGAATTGGGGAGTGGCGGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGCGGATGGTGGAAGAATACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATATCTCAGGTGGCAGCGATCGCCGCCAAGGATTCCGGCGTGGCGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGCGTTGAGGCCAGCAGTAAGTGGGTGATGGACAGCATGAATCAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAACTCGGGAATATTTGGAAATGGCATTGAATCAAGTCACACTTTGCCTCACTCAGCAACGAGAGCAGCCATGTTGGTTAGAATTAACACTCTCCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAACTTCTCAACCACAACATCACCCCATGTTTGCCACTTCGAGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGCCGACCGAACTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGCGAAGGAGGCTTTCAAACAAGCTGGTATTTCGTCTGGGTTTTTTGAGTTGCAACCTAAGGAAGGGTTGGCTCTCGTCAATGGGACTGCTGTTGGTTCGGGGTTAGCATCTATTGTTCTTTTTGAGGCAAACATTTTGGCAGTTTTAGCTGAGATTTTGTCGGCTATTTTTGCAGAGGTTATGCAAGGAAAGCCTGAATTTACAGATCATTTGACACACAAGTTAAAGCATCATCCTGGTCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTGTTATGTTAAAGAAGCTAAAAAATTGCATGAAATTGATCCTCTTCAGAAGCCAAAACAAGATCGCTACGCTCTTAGAACGTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATTAATTCAGTTAATGATAATCCTTTGATTGACGTTTCAAGGAACAAGGCTTTACATGGAGGGAACTTCCAGGGAACGCCAATCGGTGTCTCGATGGACAACACTCGCTTGGCTATAGCTTCGATTGGTAAGCTCATTTTCGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTCTACCTTCAAATCTCTCTGCCAGTAGAAACCCAAGTTTAGATTATGGATTCAAAGGTACCGAAATTGCTATGGCTTCCTATTGCTCCGAGCTTCAATATTTAGCCAACCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCAACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTAAGGCATTTGGAAGAAAATTTAAAGAGCACAGTGAAAAACACAATAAGCCAAGTGGTCAAGAAGGTCCTTACCACCGATGCTAATGGAGCTCTCCACCCATCAAGATTTTGTGAGAAGGATTTACTCAAAATTGTTGATAGAGAATACACCTTTGCTTACATTGATGACCCATGCAGTGCCACTTATCCGTTAATGCAGAAGTTAAGACAAGTTCTTGTAGAGCATGCACTTGCAAATGGAGAAGATGAGAAGAACCCAAATAGTTCAATCTTTCAAAAGATTGGTGTTTTTGAAGAGGAACTAAAAGCTGTTTTGCCCAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTTTACCGTTCAAAATCAAATTAAGGAATGTCGGTCATATCCACTCTACAAGTTTGTGAGAACTGAGTTAGGAACTGAGTTACTTACAGGAGAGAAGGTAAAATCTCCTGGAGAAGTGTGCGAGAAAGTGTTTATCGCATTATGTCAAGGAAAGATGATTGACCCAATTTTAGAGTGTTTAAAAGAGTGGAATGGTGCTCCAATCCCTATTTGCTAA 2145 43.92 MAESGHQNGFEFCIGGRNNINHDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIAAKDSGVAVELSESARGGVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDAKEAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSCYVKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTISQVVKKVLTTDANGALHPSRFCEKDLLKIVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGEDEKNPNSSIFQKIGVFEEELKAVLPKEVESARFAYENGNFTVQNQIKECRSYPLYKFVRTELGTELLTGEKVKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23808415 23811430 + ClG42_04g0095800.10 Clacu04g0958 247355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0958 714 PANTHER HISTIDINE AMMONIA-LYASE 20 714 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Clacu04g0958 714 FunFam Phenylalanine ammonia-lyase 16 260 - -
Clacu04g0958 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824(InterPro)
Clacu04g0958 714 NCBIfam phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Clacu04g0958 714 Gene3D - 14 260 IPR024083 -
Clacu04g0958 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841(InterPro)
Clacu04g0958 714 Pfam Aromatic amino acid lyase 61 537 IPR001106 -
Clacu04g0958 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Clacu04g0958 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Clacu04g0958 714 Gene3D - 527 648 IPR023144 -
Clacu04g0958 714 CDD PAL-HAL 59 524 IPR001106 -
Clacu04g0958 714 FunFam Phenylalanine ammonia-lyase 261 571 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0958 Clacu-Chr4:23808415 Clacu04g0960 Clacu-Chr4:23826336 0.00E+00 dispersed
Clacu04g0958 Clacu-Chr4:23808415 Clacu04g0959 Clacu-Chr4:23817728 0.00E+00 tandem
Clacu03g1570 Clacu-Chr3:29283756 Clacu04g0958 Clacu-Chr4:23808415 1.50E-235 transposed
Clacu02g2183 Clacu-Chr2:35019167 Clacu04g0958 Clacu-Chr4:23808415 0.00E+00 wgd
Clacu04g0958 Clacu-Chr4:23808415 Clacu08g0908 Clacu-Chr8:19205397 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0958 K10775 - csv:101217907 1349.34