Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g0959 | ATGGCACCCGTTGATCAAACCAATGATAGCTTTTGCGCCATTACTACTCATCCTGACCCACTAAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCAATGAGGTGAAGCGCATGGTCGAAGAGTATCGGAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCCAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACATGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACCGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAGTGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGACATTTGGAAGAAAACCTGAAGAATGTAGTGAAGAACACAGTAAGTCAAGTGGCTAAAAAAGTTCTCACCACCGGTGCTAATGGTGCACTTCACCCATCAAGATTTTGTGAAAAAGATTTATTGAAAGTGGTCGACAGAGAATATACCTTTGCCTATGTCGATGATGCGTGCAGTGCGACTTACCCATTGATGCAAAAACTAAGACAAGTTCTTGTTGAACATGCTCTGGGAAATGGTGAAGATGAAAAGAATGTAAACACTTCAGTTTTTCAAAGGATTGGAGTTTTTGAGGAGGAATTGAAAGCCATCTTGCCGAAAGAAGTAGAAAATGCAAGACTCTCCTATGAAAATGGAACGTCCACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCGCTATACAAGTTTGTGAGGGAGGAGTTGGGAACTGGGTTGTTGACTGGAGAGAGGGTGGTATCTCCAGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGCCAAGGAAAGATGATTGATCCAATTTTAGAGTGTTTGAAGGAGTGGAATGGTGCTCCAATCCCCATTTGCTAG | 2133 | 42.99 | MAPVDQTNDSFCAITTHPDPLNWGLAADSLKGSHLNEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQHAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALGNGEDEKNVNTSVFQRIGVFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGERVVSPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC | 710 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23817728 | 23819860 | + | ClG42_04g0095900.10 | Clacu04g0959 | 247356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g0959 | 710 | Gene3D | Fumarase/aspartase (Central domain) | 257 | 705 | - | - | |
Clacu04g0959 | 710 | FunFam | Phenylalanine ammonia-lyase | 11 | 256 | - | - | |
Clacu04g0959 | 710 | Pfam | Aromatic amino acid lyase | 57 | 535 | IPR001106 | - | |
Clacu04g0959 | 710 | SUPERFAMILY | L-aspartase-like | 19 | 710 | IPR008948 | GO:0003824(InterPro) | |
Clacu04g0959 | 710 | FunFam | Phenylalanine ammonia-lyase | 523 | 644 | - | - | |
Clacu04g0959 | 710 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 192 | 208 | IPR022313 | GO:0016841(InterPro) | |
Clacu04g0959 | 710 | PANTHER | HISTIDINE AMMONIA-LYASE | 17 | 710 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Clacu04g0959 | 710 | FunFam | Phenylalanine ammonia-lyase | 257 | 559 | - | - | |
Clacu04g0959 | 710 | NCBIfam | phenylalanine ammonia-lyase | 19 | 700 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Clacu04g0959 | 710 | Gene3D | - | 11 | 256 | IPR024083 | - | |
Clacu04g0959 | 710 | CDD | PAL-HAL | 55 | 520 | IPR001106 | - | |
Clacu04g0959 | 710 | Gene3D | - | 523 | 644 | IPR023144 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g0959 | Clacu-Chr4:23817728 | Clacu04g0961 | Clacu-Chr4:23831094 | 0.00E+00 | dispersed | |
Clacu04g0958 | Clacu-Chr4:23808415 | Clacu04g0959 | Clacu-Chr4:23817728 | 0.00E+00 | tandem | |
Clacu04g0959 | Clacu-Chr4:23817728 | Clacu04g0960 | Clacu-Chr4:23826336 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g0959 | K10775 | - | csv:101218144 | 1362.05 |