Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0960 ATGGCATCTTTTCAAAAGATTGAAGACAACCTGTGCCATGGCCATAGTGATCCACTAAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTCGAAGAGTATCGAAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCCAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACATGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACCGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAGTGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGAACACAGTTAAAAATACAGTGAGCCAAGTGGCGAAGAAAGTCCTCACAACTAGCTCAAATGGCACACTTCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGAGAATACACTTTTGCTTACATTGACGATCCATGCAGTGCTACTTATCCATTAATGCAAAAGTTAAGACAAGTTATTGTTGAGCATGCTTTGAATAATGGAGAGGACGAAAAAGACCTAAGTACTTCAATCTTTCAAAAAATTGGAACCTTTGAAGAGGAATTGAAGACCATTTTGCCTAAAGAAGTCGAAAGTGTCAGATTGGCATATGAAAATGGAGATGCAACCATTGAGAACCAAATTAAGGAATGCAGATCTTACCCATTATACAAGTTTGTGAGGGAAGAGTTGGGCACTAACTTGTTAACCGGGGAGAAAGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTTACTGCATTGTGTGAAGGAAAGATGATTGATCCTATTTTAGAATGCTTGAAGGAATGGAATGGGGCTCCAATTCCCATATGTTAA 2127 42.22 MASFQKIEDNLCHGHSDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQHAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGTFEEELKTILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTNLLTGEKVISPGEECEKVFTALCEGKMIDPILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23826336 23828462 + ClG42_04g0096000.10 Clacu04g0960 247357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0960 708 CDD PAL-HAL 53 518 IPR001106 -
Clacu04g0960 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Clacu04g0960 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Clacu04g0960 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Clacu04g0960 708 Gene3D - 9 254 IPR024083 -
Clacu04g0960 708 Gene3D - 521 642 IPR023144 -
Clacu04g0960 708 FunFam Phenylalanine ammonia-lyase 8 254 - -
Clacu04g0960 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824(InterPro)
Clacu04g0960 708 Pfam Aromatic amino acid lyase 55 534 IPR001106 -
Clacu04g0960 708 FunFam Phenylalanine ammonia-lyase 255 560 - -
Clacu04g0960 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Clacu04g0960 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2183 Clacu-Chr2:35019167 Clacu04g0960 Clacu-Chr4:23826336 0.00E+00 dispersed
Clacu03g1570 Clacu-Chr3:29283756 Clacu04g0960 Clacu-Chr4:23826336 5.90E-237 dispersed
Clacu04g0958 Clacu-Chr4:23808415 Clacu04g0960 Clacu-Chr4:23826336 0.00E+00 dispersed
Clacu04g0960 Clacu-Chr4:23826336 Clacu04g0963 Clacu-Chr4:23840285 0.00E+00 dispersed
Clacu04g0959 Clacu-Chr4:23817728 Clacu04g0960 Clacu-Chr4:23826336 0.00E+00 tandem
Clacu04g0960 Clacu-Chr4:23826336 Clacu04g0961 Clacu-Chr4:23831094 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0960 K10775 - csv:101218382 1357.43