Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g0960 | ATGGCATCTTTTCAAAAGATTGAAGACAACCTGTGCCATGGCCATAGTGATCCACTAAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTCGAAGAGTATCGAAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGAGAGTATGAATAAAGGAACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAGAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATTACCCAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACATGCTGGTATTCCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACCGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAGTGGTTAGGTCCATTGATTGAAGTGATTCGGTTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGCCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGAACACAGTTAAAAATACAGTGAGCCAAGTGGCGAAGAAAGTCCTCACAACTAGCTCAAATGGCACACTTCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGAGAATACACTTTTGCTTACATTGACGATCCATGCAGTGCTACTTATCCATTAATGCAAAAGTTAAGACAAGTTATTGTTGAGCATGCTTTGAATAATGGAGAGGACGAAAAAGACCTAAGTACTTCAATCTTTCAAAAAATTGGAACCTTTGAAGAGGAATTGAAGACCATTTTGCCTAAAGAAGTCGAAAGTGTCAGATTGGCATATGAAAATGGAGATGCAACCATTGAGAACCAAATTAAGGAATGCAGATCTTACCCATTATACAAGTTTGTGAGGGAAGAGTTGGGCACTAACTTGTTAACCGGGGAGAAAGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTTACTGCATTGTGTGAAGGAAAGATGATTGATCCTATTTTAGAATGCTTGAAGGAATGGAATGGGGCTCCAATTCCCATATGTTAA | 2127 | 42.22 | MASFQKIEDNLCHGHSDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITQLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQHAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGTFEEELKTILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTNLLTGEKVISPGEECEKVFTALCEGKMIDPILECLKEWNGAPIPIC | 708 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23826336 | 23828462 | + | ClG42_04g0096000.10 | Clacu04g0960 | 247357 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g0960 | 708 | CDD | PAL-HAL | 53 | 518 | IPR001106 | - | |
Clacu04g0960 | 708 | Gene3D | Fumarase/aspartase (Central domain) | 255 | 703 | - | - | |
Clacu04g0960 | 708 | NCBIfam | phenylalanine ammonia-lyase | 17 | 698 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Clacu04g0960 | 708 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 190 | 206 | IPR022313 | GO:0016841(InterPro) | |
Clacu04g0960 | 708 | Gene3D | - | 9 | 254 | IPR024083 | - | |
Clacu04g0960 | 708 | Gene3D | - | 521 | 642 | IPR023144 | - | |
Clacu04g0960 | 708 | FunFam | Phenylalanine ammonia-lyase | 8 | 254 | - | - | |
Clacu04g0960 | 708 | SUPERFAMILY | L-aspartase-like | 17 | 708 | IPR008948 | GO:0003824(InterPro) | |
Clacu04g0960 | 708 | Pfam | Aromatic amino acid lyase | 55 | 534 | IPR001106 | - | |
Clacu04g0960 | 708 | FunFam | Phenylalanine ammonia-lyase | 255 | 560 | - | - | |
Clacu04g0960 | 708 | PANTHER | HISTIDINE AMMONIA-LYASE | 14 | 708 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Clacu04g0960 | 708 | FunFam | Phenylalanine ammonia-lyase | 521 | 642 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2183 | Clacu-Chr2:35019167 | Clacu04g0960 | Clacu-Chr4:23826336 | 0.00E+00 | dispersed | |
Clacu03g1570 | Clacu-Chr3:29283756 | Clacu04g0960 | Clacu-Chr4:23826336 | 5.90E-237 | dispersed | |
Clacu04g0958 | Clacu-Chr4:23808415 | Clacu04g0960 | Clacu-Chr4:23826336 | 0.00E+00 | dispersed | |
Clacu04g0960 | Clacu-Chr4:23826336 | Clacu04g0963 | Clacu-Chr4:23840285 | 0.00E+00 | dispersed | |
Clacu04g0959 | Clacu-Chr4:23817728 | Clacu04g0960 | Clacu-Chr4:23826336 | 0.00E+00 | tandem | |
Clacu04g0960 | Clacu-Chr4:23826336 | Clacu04g0961 | Clacu-Chr4:23831094 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g0960 | K10775 | - | csv:101218382 | 1357.43 |