Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0961 ATGGCACCAACTCAATTCCAGCAACAGAATGGTTCAATGGAGTGCTTGTGCACTAGCCACAACGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTTGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGTGGTGAAACCCTCACTATTTCTCAAGTAGCTGCTATTGCTACTCGGGACTTTGATGTTACGGTTGAACTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGAACAAAGGGACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGAGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAACGCTGGGATTTTTGGAAATGGAGCTGAGTCTGATCATACTTTGCCCCACTCAGCGACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAAATTTTGGAAGCTATAACCAAACTTTTGAACCATAACATTACTCCATGCTTGCCTCTTCGTGGAACAATTACTGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGACGACCTAACTCTAAGGCGATTGGACCCAACGGAGAACATATTGACGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTCGAATTGCAACCTAAGGAAGGCCTTGCTCTTGTTAATGGTACTGCTGTCGGATCAGGATTGGCTTCTATTGTCCTCTTTGAGGCAAATATTTTGGCTGTTCTGGCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTTACTGATCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATTGATCCCCTCCAAAAGCCTAAACAAGATCGCTATGCTCTAAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCTACAAAATCTATTGAGCGAGAGATTAACTCCGTCAATGACAACCCTTTGATTGACGTTTCAAGAAACAAAGCATTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGATTGGCCATTGCTTCTATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTTAATGATTTCTACAACAACGGTTTGCCATCTAATCTTTCTGCAAGTAGAAATCCGAGTTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGCCATGTTCAAAGCGCCGAGCAACACAATCAAGATGTTAACTCTTTAGGTTTAATTTCTTCAAGGAAAACAGTTGAAGCCATTGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCACTGTGAAAAGCACTGTTAGCCAAATAGCCAAGAAAGTATTAACCACATCCTCTAATGGCGCACTTCACCCCTCAAGATTTTGTGAGAAAGATCTACTCAAAGTCGTTGATAGAGAGTACACATTTGCTTATATCGACGATCCATGTAGTGCTACTTACCCATTAAGCCAAAAATTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAACGGTGATGATGAAAAGAACCCAAACACTTCAATCTTCCAAAAGATTGTTTCTTTCGAGGAGGAACTAAAGGCAATATTACCCAAGGAAGTTGAAAATGCAAGGTTGGCCTATGAGAGTGGAAATTCTAAAATTGAAAATCAAATCAAGAATTGTAGATCATATCCGTTGTATAGATTTGTAAGAGAAGAGTTGGAAACAAAAATGCTATCAGGAGAAAGAGTAATATCTCCAGGAGAAGAGTGTGAGAAAGTATTCACAGCTTTGTGTCAAGGCAAGATGATAGACTCGATCTTAGAGTGCTTGAAGGAGTGGAATGGTGCTCCAATTCCTATTTGCTAA 2142 42.06 MAPTQFQQQNGSMECLCTSHNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDFDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGEHIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTVEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGDDEKNPNTSIFQKIVSFEEELKAILPKEVENARLAYESGNSKIENQIKNCRSYPLYRFVREELETKMLSGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23831094 23833235 - ClG42_04g0096100.10 Clacu04g0961 247358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0961 713 CDD PAL-HAL 58 523 IPR001106 -
Clacu04g0961 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Clacu04g0961 713 Gene3D - 14 259 IPR024083 -
Clacu04g0961 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Clacu04g0961 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Clacu04g0961 713 PANTHER HISTIDINE AMMONIA-LYASE 19 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Clacu04g0961 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Clacu04g0961 713 Gene3D - 526 647 IPR023144 -
Clacu04g0961 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Clacu04g0961 713 FunFam Phenylalanine ammonia-lyase 260 561 - -
Clacu04g0961 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Clacu04g0961 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0959 Clacu-Chr4:23817728 Clacu04g0961 Clacu-Chr4:23831094 0.00E+00 dispersed
Clacu04g0961 Clacu-Chr4:23831094 Clacu07g1188 Clacu-Chr7:26709956 0.00E+00 dispersed
Clacu04g0960 Clacu-Chr4:23826336 Clacu04g0961 Clacu-Chr4:23831094 0.00E+00 tandem
Clacu04g0961 Clacu-Chr4:23831094 Clacu04g0962 Clacu-Chr4:23836041 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0961 K10775 - csv:101218617 1340.87