Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g0962 | ATGGCACCTGCCCAATTGGAACAATGTGCTCACCATAATGGCTCGATGGAGAGCTTTTGCACAAGCCATGTTGATCCACTCAATTGGGGTGTGGCAGCTGATGCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGAGGATGGTGGAAGAGTATAGACGGCCTGTGGTGAAGCTTGGGGGTGAGACTCTTACTATTTCTCAAGTGGCTGCTATTGCCACTCGTGATAATGATGTGATTGTGAAATTGGCTGAGTCTGCTAGGGGGGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAGTAAAGGGACTGATAGTTATGGTGTTACTACCGGATTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGTGGGGCTCTTCAGAAGGAGTTGATTCGGTTTTTGAATGCTGGAATTTTTGGAAATGGGACTGAGTCGAATCATACTTTGCCTCATTCGGCGACGAGGGCAGCCATGTTGGTGAGGATCAATACTCTGCTTCAAGGCTATTCGGGTATTCGATTTGAGATTTTGGAAGCTATTGCTAATCTTCTCAATCAAAACATTACTCCATGTTTGCCACTGCGAGGAACAATTACGGCATCTGGGGATCTTGTCCCTTTGTCGTATATTGTTGGGCTACTTACCGGTCGTCATAATTCCAAGGCCATTGGGCCTAATGGGGAAACTCTTGACGCAGAGACTGCCTTTAAAAAAGCTGGCATTCCTTCTGGCTTCTTCGAGTTGCAACCCAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTGGCCTCTATTGTCCTATTTGAGGCAAATATATTAGCTGTTTTGTCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCCGAATTCACCGATCATTTGACTCACAAGTTGAAACATCATCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCTTACATGAAAACAGCCAAGAAACTACATGAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGATAACACGCGGTTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTCAACGATTTTTACAACAACGGCTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGTCATGTCCAAAGTGCTGAACAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCGAGAAAAACAGCTGAAGCCATTGATATCTTGAAACTCATGTCGTCAACATTTTTAGTTGCACTCTGCCAAGCAATTGACTTGAGGCACTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGCCAAGTAGCCAAGAAGATGTTGACGACATCCTCCAATGGTGCACTACACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTCGTTGATAGAGAATACACATTTGCATACATTGATGATCCATGCAGCGCTACTTATCCGTTGATGCAAAAATTGAGACAAGTATTGGTTGAACATGCACTCACCAATGGCGAAAATGAAAAGGACATGAACACTTCCATCTTCCAGAAGATTACTGATTTTGAAGAGGAATTAAAAGCAATTTTACCAAAGGAAATTGAAAACGCAAGGTTGGCATATGAGAGTGGAAATTCTAAAATTGCAAATCAAATTAGGGATTGCAGATCCTATCCATTATATAGATTTGTGAGAGAAGACTTGGGAACAAAACTTTTGACTGGAGAAAGGGTTATATCTCCCGGAGAAGAATGCGAGAAGGTATTTACAGCTTTGTGTCAAGGAAAGATGATTGACTCTATCTTAGAGTGCTTAAAAGAGTGGAATGGTGCTCCCATTCCTATCCGTTGA | 2151 | 42.35 | MAPAQLEQCAHHNGSMESFCTSHVDPLNWGVAADALKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVIVKLAESARGGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNQNITPCLPLRGTITASGDLVPLSYIVGLLTGRHNSKAIGPNGETLDAETAFKKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKMLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGENEKDMNTSIFQKITDFEEELKAILPKEIENARLAYESGNSKIANQIRDCRSYPLYRFVREDLGTKLLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIR | 716 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 23836041 | 23838191 | - | ClG42_04g0096200.10 | Clacu04g0962 | 247359 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g0962 | 716 | FunFam | Phenylalanine ammonia-lyase | 16 | 262 | - | - | |
Clacu04g0962 | 716 | NCBIfam | phenylalanine ammonia-lyase | 25 | 706 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Clacu04g0962 | 716 | CDD | PAL-HAL | 61 | 526 | IPR001106 | - | |
Clacu04g0962 | 716 | Gene3D | - | 529 | 650 | IPR023144 | - | |
Clacu04g0962 | 716 | SUPERFAMILY | L-aspartase-like | 25 | 715 | IPR008948 | GO:0003824(InterPro) | |
Clacu04g0962 | 716 | Gene3D | - | 17 | 262 | IPR024083 | - | |
Clacu04g0962 | 716 | FunFam | Phenylalanine ammonia-lyase | 529 | 650 | - | - | |
Clacu04g0962 | 716 | Pfam | Aromatic amino acid lyase | 63 | 542 | IPR001106 | - | |
Clacu04g0962 | 716 | FunFam | Phenylalanine ammonia-lyase | 263 | 572 | - | - | |
Clacu04g0962 | 716 | Gene3D | Fumarase/aspartase (Central domain) | 263 | 711 | - | - | |
Clacu04g0962 | 716 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 198 | 214 | IPR022313 | GO:0016841(InterPro) | |
Clacu04g0962 | 716 | PANTHER | HISTIDINE AMMONIA-LYASE | 22 | 715 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g0962 | Clacu-Chr4:23836041 | Clacu07g1188 | Clacu-Chr7:26709956 | 0.00E+00 | dispersed | |
Clacu04g0961 | Clacu-Chr4:23831094 | Clacu04g0962 | Clacu-Chr4:23836041 | 0.00E+00 | tandem | |
Clacu04g0962 | Clacu-Chr4:23836041 | Clacu04g0963 | Clacu-Chr4:23840285 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g0962 | K10775 | - | csv:101222092 | 1350.88 |