Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0962 ATGGCACCTGCCCAATTGGAACAATGTGCTCACCATAATGGCTCGATGGAGAGCTTTTGCACAAGCCATGTTGATCCACTCAATTGGGGTGTGGCAGCTGATGCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGAGGATGGTGGAAGAGTATAGACGGCCTGTGGTGAAGCTTGGGGGTGAGACTCTTACTATTTCTCAAGTGGCTGCTATTGCCACTCGTGATAATGATGTGATTGTGAAATTGGCTGAGTCTGCTAGGGGGGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAGTAAAGGGACTGATAGTTATGGTGTTACTACCGGATTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGTGGGGCTCTTCAGAAGGAGTTGATTCGGTTTTTGAATGCTGGAATTTTTGGAAATGGGACTGAGTCGAATCATACTTTGCCTCATTCGGCGACGAGGGCAGCCATGTTGGTGAGGATCAATACTCTGCTTCAAGGCTATTCGGGTATTCGATTTGAGATTTTGGAAGCTATTGCTAATCTTCTCAATCAAAACATTACTCCATGTTTGCCACTGCGAGGAACAATTACGGCATCTGGGGATCTTGTCCCTTTGTCGTATATTGTTGGGCTACTTACCGGTCGTCATAATTCCAAGGCCATTGGGCCTAATGGGGAAACTCTTGACGCAGAGACTGCCTTTAAAAAAGCTGGCATTCCTTCTGGCTTCTTCGAGTTGCAACCCAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTGGCCTCTATTGTCCTATTTGAGGCAAATATATTAGCTGTTTTGTCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCCGAATTCACCGATCATTTGACTCACAAGTTGAAACATCATCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCTTACATGAAAACAGCCAAGAAACTACATGAAATTGATCCCCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGATAACACGCGGTTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTCAACGATTTTTACAACAACGGCTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGTCATGTCCAAAGTGCTGAACAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCGAGAAAAACAGCTGAAGCCATTGATATCTTGAAACTCATGTCGTCAACATTTTTAGTTGCACTCTGCCAAGCAATTGACTTGAGGCACTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGCCAAGTAGCCAAGAAGATGTTGACGACATCCTCCAATGGTGCACTACACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTCGTTGATAGAGAATACACATTTGCATACATTGATGATCCATGCAGCGCTACTTATCCGTTGATGCAAAAATTGAGACAAGTATTGGTTGAACATGCACTCACCAATGGCGAAAATGAAAAGGACATGAACACTTCCATCTTCCAGAAGATTACTGATTTTGAAGAGGAATTAAAAGCAATTTTACCAAAGGAAATTGAAAACGCAAGGTTGGCATATGAGAGTGGAAATTCTAAAATTGCAAATCAAATTAGGGATTGCAGATCCTATCCATTATATAGATTTGTGAGAGAAGACTTGGGAACAAAACTTTTGACTGGAGAAAGGGTTATATCTCCCGGAGAAGAATGCGAGAAGGTATTTACAGCTTTGTGTCAAGGAAAGATGATTGACTCTATCTTAGAGTGCTTAAAAGAGTGGAATGGTGCTCCCATTCCTATCCGTTGA 2151 42.35 MAPAQLEQCAHHNGSMESFCTSHVDPLNWGVAADALKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVIVKLAESARGGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNQNITPCLPLRGTITASGDLVPLSYIVGLLTGRHNSKAIGPNGETLDAETAFKKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKMLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGENEKDMNTSIFQKITDFEEELKAILPKEIENARLAYESGNSKIANQIRDCRSYPLYRFVREDLGTKLLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23836041 23838191 - ClG42_04g0096200.10 Clacu04g0962 247359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0962 716 FunFam Phenylalanine ammonia-lyase 16 262 - -
Clacu04g0962 716 NCBIfam phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Clacu04g0962 716 CDD PAL-HAL 61 526 IPR001106 -
Clacu04g0962 716 Gene3D - 529 650 IPR023144 -
Clacu04g0962 716 SUPERFAMILY L-aspartase-like 25 715 IPR008948 GO:0003824(InterPro)
Clacu04g0962 716 Gene3D - 17 262 IPR024083 -
Clacu04g0962 716 FunFam Phenylalanine ammonia-lyase 529 650 - -
Clacu04g0962 716 Pfam Aromatic amino acid lyase 63 542 IPR001106 -
Clacu04g0962 716 FunFam Phenylalanine ammonia-lyase 263 572 - -
Clacu04g0962 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Clacu04g0962 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Clacu04g0962 716 PANTHER HISTIDINE AMMONIA-LYASE 22 715 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0962 Clacu-Chr4:23836041 Clacu07g1188 Clacu-Chr7:26709956 0.00E+00 dispersed
Clacu04g0961 Clacu-Chr4:23831094 Clacu04g0962 Clacu-Chr4:23836041 0.00E+00 tandem
Clacu04g0962 Clacu-Chr4:23836041 Clacu04g0963 Clacu-Chr4:23840285 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0962 K10775 - csv:101222092 1350.88