Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0963 ATGGCCCCAATGGAGACCATCTGCAAGAGCTCCATTCATGACCCACTCAACTGGGGTGTAGCTGCTGAGTCCCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATCGAAGGCCCCTTGTCAAGCTTGGAGGTGAAACCCTCACCATTTCGCAAGTAGCTGCCATTGCTACTCGAGATTCTGATGTTGTTGTTGAGCTTTCTGAGTCTGCTAGAGCGGGTGTTAAAGCTAGTAGTGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGTTATGGAGTTACTACTGGTTTTGGTGCTACGTCTCATAGGAGGACAAAACAAGGTGGAGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATGCTGGGATCTTTGGAAATGGGACTGAGTCTAGTCATACTTTGCCTCATTCAGCTACAAGAGCGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGAACAATAACATCACCCCGTGTTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCGAATTCTAAAGCTGTTGGTCCAAATGGTGAAAGTCTTGATGCAAAGAAGGCTTTCCAACAAGCTGGCATTCCATCAGGGTTTTTCGAATTGCAGCCTAAGGAAGGGTTGGCTCTTGTTAATGGCACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTTTTTGAGGCAAATATTTTGGCTGTCTTATCTGAGATTTTGTCTGCCATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACAGACCATTTGACCCACAAGTTGAAACATCATCCTGGCCAAATTGAAGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTTAACGATAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTTTCTGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAGATCCAGTGACAAGTCATGTTCAAAGTGCAGAACAACACAACCAAGATGTTAACTCTCTTGGTTTGATTTCTTCAAGAAAAACAGCCGAAGCCATTGATATTCTGAAACTCATGTCTTCCACCTTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACGGTTAAAACCATTGTAAGCCAAGTGGCGAAAAAAGTTTTGACCACATCCTCTAGTGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGACTTATTGAAGGTTGTTGACAGAGAGTATACTTTTGCATATATAGACGATCCATGCAGTGCCACGTATCCACTAATGCAGAAGTTGAGGCAAGTTCTTGTTGAACACGCACTTGCAAATGGTGATGACGAAAAGAATGCAAGCACTTCAATCTTCCAAAAGATTGCTACTTTTGAGGAGGAACTAAAGGTAGTTTTACCAAAAGCAATTGAAAATACAAGGTTGGCATACGAGAGTGGAAAAGCACCTATTAAGAATCAAATTGAAGAATGCAGATCTTATCCATTATACAGATTTGTGAGGAAAGAGTTAGGAACAAATCTGTTAACAGGTGAAAAAGTGATATCTCCGGGGGAAGAATGTGAAAAGGTATTCACAGCTTTGTGTCAAGGAAAGATGATTGATTCTATCTTAGAATGTTTGAATGAGTGGAATGGAGCTCCAATTCCCATATGTTAG 2118 41.88 MAPMETICKSSIHDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVVVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKKAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLADPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKTIVSQVAKKVLTTSSSGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGDDEKNASTSIFQKIATFEEELKVVLPKAIENTRLAYESGKAPIKNQIEECRSYPLYRFVRKELGTNLLTGEKVISPGEECEKVFTALCQGKMIDSILECLNEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23840285 23842402 - ClG42_04g0096300.10 Clacu04g0963 247360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0963 705 Pfam Aromatic amino acid lyase 52 531 IPR001106 -
Clacu04g0963 705 Gene3D - 518 639 IPR023144 -
Clacu04g0963 705 PANTHER HISTIDINE AMMONIA-LYASE 10 705 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Clacu04g0963 705 FunFam Phenylalanine ammonia-lyase 518 639 - -
Clacu04g0963 705 FunFam Phenylalanine ammonia-lyase 6 251 - -
Clacu04g0963 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824(InterPro)
Clacu04g0963 705 NCBIfam phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Clacu04g0963 705 Gene3D - 6 251 IPR024083 -
Clacu04g0963 705 CDD PAL-HAL 50 515 IPR001106 -
Clacu04g0963 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Clacu04g0963 705 FunFam Phenylalanine ammonia-lyase 252 560 - -
Clacu04g0963 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0960 Clacu-Chr4:23826336 Clacu04g0963 Clacu-Chr4:23840285 0.00E+00 dispersed
Clacu04g0963 Clacu-Chr4:23840285 Clacu07g1187 Clacu-Chr7:26706119 0.00E+00 dispersed
Clacu04g0962 Clacu-Chr4:23836041 Clacu04g0963 Clacu-Chr4:23840285 0.00E+00 tandem
Clacu04g0963 Clacu-Chr4:23840285 Clacu04g0964 Clacu-Chr4:23845158 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0963 K10775 - csv:101218856 1330.08