Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0991 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCAGCTTGCCGCTCCGTGCCGGTGCTGGTACCCCCGCCGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTAAATGCTTCCTTAACGAGAAGGCAATTGCTCCATATCTCAGAGAAGGATGATTCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAAAATGGCGAGTTCTACATAGTCACAGACGATTCGGACGACGATGCGGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATCAAACTCAAACAAGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCATATAGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAATGTCATCATCCACAACATCCATATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGATATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGGCTGATCGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGCTGTTGGGTCACAGCGATCACTACTTGCCGGATTCCGGAATGCAGGTTACAATAGCATTCAACCACTTCGGAGAGAAGCTGGTGCAAAGGATGCCACGATGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGAAACCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCTTACGACCGCAACGCCAAGGAAGTAACCAAGCGAGTCGAAACTTCCGAGTCTGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGCGATATCCTCGTAAACGGCGCTTTCTTCGTCACTTCCGGCCAAGGCCTTGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAACCTAAGTCCGCCGCCCTAATTGACCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGACAATAATTTGGGAATGTGGACTACTGGCCCTAATGGCGGAGGCTTTGCGCTTGGTTCTGGGATGGATTACACTGACGACATGTCGGAAAGTTATTTTGTTAGGGTTTTTTCTCTTTTGTTGTGCTCTTTTTGCGCATTGGTGCTTGCCTTTGTGCTATGA 1431 52.62 MLATTCIVLLALLLPSSLPLRAGAGTPAAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLHISEKDDSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDHYLPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFALGSGMDYTDDMSESYFVRVFSLLLCSFCALVLAFVL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24080645 24083925 + ClG42_04g0099100.10 Clacu04g0991 247388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0991 476 PANTHER PECTATE LYASE 18-RELATED 24 420 IPR045032 GO:0030570(InterPro)
Clacu04g0991 476 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Clacu04g0991 476 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Clacu04g0991 476 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Clacu04g0991 476 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Clacu04g0991 476 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Clacu04g0991 476 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Clacu04g0991 476 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Clacu04g0991 476 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Clacu04g0991 476 Pfam Pectate lyase 158 341 IPR002022 -
Clacu04g0991 476 Gene3D - 77 419 IPR012334 -
Clacu04g0991 476 FunFam Pectate lyase 77 419 - -
Clacu04g0991 476 SUPERFAMILY Pectin lyase-like 73 402 IPR011050 -
Clacu04g0991 476 SMART amb_all 152 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0991 Clacu-Chr4:24080645 Clacu05g2323 Clacu-Chr5:31579650 5.30E-181 dispersed
Clacu04g0991 Clacu-Chr4:24080645 Clacu08g0933 Clacu-Chr8:19464572 2.50E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0991 K01728 - csv:101203012 921.383