Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1002 ATGGCCAAGCTATTATCATTGTCAACGCAAGGCCTATGGGCATCTCTGCTAATCGTGTTGTCGCATGTAATTTCTCATTCAAACGCAGCAGCCTCATTGAGACGTCTCCCGCCTTATGCAAAAGCGCGCAGGCAATTAGGAGGCGCGCAGTTTATTAAAAAGCATCACAGGCCGCCGTTTAAGCCCGGCCCTTGGAAGCAAGCCCACGCTACCTTCTATGAAGGTGGCTCCGGAACCTTCGGTGGTGCATGTGGGTACGACGACGTGGAAAAGGAAGGGTATGGAATGCAGACGGCGGCGCTTAGCATGGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCTTGCTTTGAAATCAAATGCATTGACGATCCACAGCGGTGCAAGCCCGGGCAGCCGTCGCTCATGGTAACCGGCACCAACCACTGCCCGCCGAACTACAACCTTGCTAGTGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGATATAGCCAAGCCTGTTTTTCTCAACATTGCCGAGTTCAAGGCTGGCATTGTTCCTATCACTTACCGCAGGGTTCCATGCAAAAAGCAAGGAGGAATTCGATTCACAATAACTGGGAATCATTATTTCAACCAAGTGTTAGTGTGGAACGTAGGAGGAGCTGGAGATGTGAAAAGTGTCCAAGTGAAGGGTCACCGTAAGCTGAAATGGACAACCATGTCTCGATCGTGGGGTCAAAAATGGGTCACCAACGCCATGATGGTTGGCGAGTCTCTCACCTTCAGGGTTCGAACCAGTGATGGCAAATTCTCCACTTCATGGCACATTGCTCCCACCAATTGGCAGTTTGGGGTTTACTCAATTAATTTCGCCATTAAAAACAATTGTCCGTTCCCAATTTGGCCGGGAGCTTTAACCGGTGCCGGCAACCAACTATCAACCACTGGCTTCGAATTACTCCCCGGATCAACAACAACGGTAACGACTTCTCCGCCGTGGTCCGGCAGATTTTGGGCAAGAACACTCTGTTCCACTGATGCAAGTGGAAAGTTCTCTTGCGCAACCGCCGATTGTGGCAGTGGCCAAGTCACATGTAACGGCGCCGGCGGAATTCCGCCAGCAAGCCTAGTGGAATTCACAATTGCGCCAAGCGGCGGCCAAGATTTCTTCGACATCAGCCTTGTCGATGGCTTCAATTTACCTGTTTCAGTGGCGCCGATTGGTGGTTCGGGTGGGGCGTGCCAAACGGTACTTTGTACAGGAAATGTAAATGCTGTTTGTCCACTGGAATTAGCCATTACAGATGAAGGTGGCGCAGTGATCGCTTGTAAAAGTGCTTGTATGGCCTTTAATCAGCCTGAATATTGCTGCAGTGGCGACCATAATCAGCCGGAAACTTGCCCGCCAACCAATTATTCAATGATTTTCAAGAATCAGTGTCCGCAAGCTTATAGCTACGCTTATGATGATAAGACAAGTACTTTTACTTGCACCGGTGGAGCTGATTATGCCATCACATTTTGTCCTTGA 1518 50.46 MAKLLSLSTQGLWASLLIVLSHVISHSNAAASLRRLPPYAKARRQLGGAQFIKKHHRPPFKPGPWKQAHATFYEGGSGTFGGACGYDDVEKEGYGMQTAALSMALFNNGQSCGACFEIKCIDDPQRCKPGQPSLMVTGTNHCPPNYNLASDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRRVPCKKQGGIRFTITGNHYFNQVLVWNVGGAGDVKSVQVKGHRKLKWTTMSRSWGQKWVTNAMMVGESLTFRVRTSDGKFSTSWHIAPTNWQFGVYSINFAIKNNCPFPIWPGALTGAGNQLSTTGFELLPGSTTTVTTSPPWSGRFWARTLCSTDASGKFSCATADCGSGQVTCNGAGGIPPASLVEFTIAPSGGQDFFDISLVDGFNLPVSVAPIGGSGGACQTVLCTGNVNAVCPLELAITDEGGAVIACKSACMAFNQPEYCCSGDHNQPETCPPTNYSMIFKNQCPQAYSYAYDDKTSTFTCTGGADYAITFCP 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24222524 24228659 + ClG42_04g0100200.10 Clacu04g1002 247399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1002 505 SUPERFAMILY Barwin-like endoglucanases 64 213 IPR036908 -
Clacu04g1002 505 SMART tha2 286 505 IPR001938 -
Clacu04g1002 505 Pfam Thaumatin family 290 505 IPR001938 -
Clacu04g1002 505 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 205 280 IPR007117 -
Clacu04g1002 505 SMART dpbb_1 98 185 IPR007112 -
Clacu04g1002 505 SUPERFAMILY Osmotin, thaumatin-like protein 285 505 IPR037176 -
Clacu04g1002 505 SUPERFAMILY PHL pollen allergen 192 281 IPR036749 -
Clacu04g1002 505 PRINTS Expansin/Lol pI family signature 178 194 IPR007118 GO:0005576(InterPro)
Clacu04g1002 505 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576(InterPro)
Clacu04g1002 505 PRINTS Expansin/Lol pI family signature 64 79 IPR007118 GO:0005576(InterPro)
Clacu04g1002 505 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576(InterPro)
Clacu04g1002 505 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Clacu04g1002 505 FunFam THAUMATIN-LIKE PROTEIN 1 284 505 - -
Clacu04g1002 505 CDD TLP-PA 286 504 - -
Clacu04g1002 505 CDD DPBB_EXPA_N 64 190 - -
Clacu04g1002 505 PANTHER EXPANSIN-A15 35 280 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 Gene3D - 51 191 IPR036908 -
Clacu04g1002 505 Gene3D Thaumatin 287 505 IPR037176 -
Clacu04g1002 505 ProSiteProfiles Thaumatin family profile. 283 505 IPR001938 -
Clacu04g1002 505 Pfam Expansin C-terminal domain 196 274 IPR007117 -
Clacu04g1002 505 Gene3D - 195 286 IPR036749 -
Clacu04g1002 505 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 195 IPR007112 -
Clacu04g1002 505 Pfam Lytic transglycolase 98 185 IPR009009 -
Clacu04g1002 505 ProSitePatterns Thaumatin family signature. 345 361 IPR017949 -
Clacu04g1002 505 PRINTS Expansin signature 271 287 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 PRINTS Expansin signature 242 263 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 PRINTS Expansin signature 194 206 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 PRINTS Expansin signature 170 183 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 PRINTS Expansin signature 134 144 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 PRINTS Expansin signature 93 107 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 PRINTS Expansin signature 153 170 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 PRINTS Expansin signature 120 131 IPR002963 GO:0009664(InterPro)
Clacu04g1002 505 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1002 Clacu-Chr4:24222524 Clacu07g0524 Clacu-Chr7:6700707 1.50E-77 dispersed
Clacu08g0170 Clacu-Chr8:3315926 Clacu04g1002 Clacu-Chr4:24222524 1.20E-109 transposed
Clacu08g0395 Clacu-Chr8:5152252 Clacu04g1002 Clacu-Chr4:24222524 1.00E-110 transposed
Clacu10g1961 Clacu-Chr10:33145580 Clacu04g1002 Clacu-Chr4:24222524 3.10E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1002 - - - 0.0