Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu04g1007 | ATGGCTTCTACTCTCTGTTTTCCCTCAATCACTTTCCCCTCCTCTCCCTTCCACAAACGAATCCCTCTCAGACGAAGAACCCCATCTCCTTATCCCTCCATTAAATCCTCCATTGACGAAGGAGGAAATCCCTCAACGCCCGCAAAGCTTAAGAACTCCACAAGCACTGCAAAATCCGGCTCCTGGGTCAGCCCTGATTGGCTCACCTCTCTAACTCGTTACATTACTCTAGGGCAGGGCGACGACTCCGGCATCCCCATTGCAACTGCCAAGCTCGATGACGTTTCTGATCTTCTCGGCGGTGCTCTTTTCCTTCCACTTTTCAAGTGGATGAATGACTATGGACCCATTTACAGGCTGGCTGCTGGCCCTAGAAATTTTGTCGTCGTTAGTGATCCTGCCATTGCTAAGCACGTTCTCAGGAACTATGGGACTTACGCTAAAGGCCTTGTTTCTGAGGTTTCCGAGTTCTTGTTTGGGTCAGGTTTCGCCATTGCAGAAGGCCCTCTCTGGACGGTTCGCCGTAGGGCTGTGGTTCCATCTCTTCACAAGAAGTACTTATCGGTTATTGTCGATCGAGTATTTTGTAAATGTGCCACGAGATTGGTGGAGAAGCTGGAAAAGGATGCATTAAATAATAATTCGGTTAACATGGAGGAAAAGTTTTCTCAACTAACTCTTGATGTTATTGGTCTATCTGTATTCAACTACAGTTTTGATTCTCTCTCTACTGACAGCCCAGTGATTGATGCAGTTTACACTGCTTTGAAAGAGGCAGAGGCTCGTTCTACTGATATTTTACCATATTGGAAGATTAAGGCTCTGTGTAAGATAATCCCAAGACAGATAAAAGCTGAAGAAGCAGTTACGGTGATCAGGAGAACTGTTGAAGAACTCATTGCCAAGTGCAAAGAAATTGTTGAAAGTGAGGGTGAGCGTATTGATGAGGAGGAATATGTGAATGATGCTGATCCAAGCATCCTCCGATTTCTGCTGGCCAGTAGAGAAGAGGTCTCAAGTGTACAGTTACGAGACGACCTATTGTCCATGTTGGTTGCTGGGCATGAAACTACTGGTTCTGTTCTGACTTGGACACTGTATCTTTTAAGTAAGCATTCCTCATCATTGGTCAAGGCACAAAATGAAGTTGATAGAGTGTTACAAGGAAGGCCTCCTTCTTATGAAGATACGAAGGAACTTAAATATTTGACACGTTGTATCCTTGAGTCAATGCGACTTTACCCACATCCACCTGTTTTGATAAGAAGAGCTCAAGTTGCCGACATACTCCCCGGAAATTACAAGGTTAATGCTGGTCAAGATATCATGATTTCAGTATATAACATCCATCGCTCTTCCCAGGTCTGGGAACAATCAGAAGAGTTTATACCAGAAAGATTTGACTTGGAAGGCCCTGTGCCTAATGAAAGCAATACAGATTTCAGATTTATTCCGTTCAGCGGTGGACCTCGAAAATGTGTCGGTGATCAATTTGCCTTGCTTGAAGCTATTGTTGCACTTGCCATATTTCTACAGCATATGAATTTCGAGCTGGTTCCAAATCAGACCATTGGGATGACTACTGGAGCAACTATACATACAACAAACGGTTTGTACATGAAACTCAGCCAAAGGAAGCTGACCCAAGAGTTAGTTTCTCCTGCATCTTCAAGATGGCGGTGGCCGGAGATGGAAGCCGGGTGGTTGCTGATGGCTTTCCTTGGTGATGCCTCCTGCATAATTTGCCTCAGTGGCTCGTGTTTCGCCAACGTTGTTATGACCAATGTCATGGCGTCTGCGTCTGGGACGGGGAATATTGATGATTGTTTTGTGGTGCCTGGGTTGGAGCATAGGGTAGAGGTCACCAAGGCTCAATTGCCCATTCATGGGGTTTTGAGTGGTGGGATGATGAAGTTTTTGGAGCAAATTGGTGAGGCTGAGAAGAAATGTTATGCGATGATTGTTAATAGCTTTGAGGAGTTGGAGGGTTCTTATGTAACACAATTGAAGAAGAAGGTTAGAGGAAATAGAGTTTGGTGTGTTGGACCTGTTTCTTCTTGCAAAGGCTCAACAGAGGAGGGGCAGGACAACAATAACAACAATGATAAAGTGATGAAGTGGCTGGACTTGCAAGACCCAAACTCAGTGGTGCCATTTATATGGGTGGTAAGAGCCTCAAACAAGCTAGAACAATGGATTGAAGAAGAGAATTTTGATGAGAGAATCAAAACAAGAGGTCTTGTTATAAGAGATTGGGCTCCACAACTTTTGATATTATCACACTCAGCCATTGGGGGATTCCTCACTCATTGTGGTTGGAACTCAGTCCTTGAAGCCATATCTGCTGGCTTGCCAATGCTCACTTGGCCTTTATTCTCAGACCAGTTTTTGAATGAGAAATTGGTGGCTGATGTTTTGATTATAGCTGTGAAAATTGGTGCTAAAAATCCAGGGATGAAAAGGAAGGAAGAAGGAGAAGATGAAGAAGAAGAGGAGGGAATAATAACAGAGGTAAAGAATGAAAATGTTAGGGAAGGAATTGAAAGGTTAATGGGAAAAGGAGATGAAGCTGAGGAAAGAAGGGGTTATGGCAAAGAATGCTTGTGA | 2607 | 44.11 | MASTLCFPSITFPSSPFHKRIPLRRRTPSPYPSIKSSIDEGGNPSTPAKLKNSTSTAKSGSWVSPDWLTSLTRYITLGQGDDSGIPIATAKLDDVSDLLGGALFLPLFKWMNDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTYAKGLVSEVSEFLFGSGFAIAEGPLWTVRRRAVVPSLHKKYLSVIVDRVFCKCATRLVEKLEKDALNNNSVNMEEKFSQLTLDVIGLSVFNYSFDSLSTDSPVIDAVYTALKEAEARSTDILPYWKIKALCKIIPRQIKAEEAVTVIRRTVEELIAKCKEIVESEGERIDEEEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKHSSSLVKAQNEVDRVLQGRPPSYEDTKELKYLTRCILESMRLYPHPPVLIRRAQVADILPGNYKVNAGQDIMISVYNIHRSSQVWEQSEEFIPERFDLEGPVPNESNTDFRFIPFSGGPRKCVGDQFALLEAIVALAIFLQHMNFELVPNQTIGMTTGATIHTTNGLYMKLSQRKLTQELVSPASSRWRWPEMEAGWLLMAFLGDASCIICLSGSCFANVVMTNVMASASGTGNIDDCFVVPGLEHRVEVTKAQLPIHGVLSGGMMKFLEQIGEAEKKCYAMIVNSFEELEGSYVTQLKKKVRGNRVWCVGPVSSCKGSTEEGQDNNNNNDKVMKWLDLQDPNSVVPFIWVVRASNKLEQWIEEENFDERIKTRGLVIRDWAPQLLILSHSAIGGFLTHCGWNSVLEAISAGLPMLTWPLFSDQFLNEKLVADVLIIAVKIGAKNPGMKRKEEGEDEEEEEGIITEVKNENVREGIERLMGKGDEAEERRGYGKECL | 868 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 24295185 | 24306396 | - | ClG42_04g0100700.10 | Clacu04g1007 | 247404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu04g1007 | 868 | PRINTS | E-class P450 group I signature | 445 | 469 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | PRINTS | E-class P450 group I signature | 342 | 359 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | PRINTS | E-class P450 group I signature | 483 | 493 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | PRINTS | E-class P450 group I signature | 493 | 516 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | PRINTS | E-class P450 group I signature | 362 | 388 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | PRINTS | E-class P450 group I signature | 111 | 130 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | Gene3D | Glycogen Phosphorylase B; | 718 | 861 | - | - | |
| Clacu04g1007 | 868 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 569 | 856 | - | - | |
| Clacu04g1007 | 868 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 486 | 495 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu04g1007 | 868 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
| Clacu04g1007 | 868 | PANTHER | CYTOCHROME P450 FAMILY 4 | 102 | 543 | IPR050196 | GO:0009507(PANTHER)|GO:0009974(PANTHER)|GO:0016117(PANTHER) | |
| Clacu04g1007 | 868 | MobiDBLite | consensus disorder prediction | 849 | 868 | - | - | |
| Clacu04g1007 | 868 | CDD | CYP97 | 105 | 539 | - | - | |
| Clacu04g1007 | 868 | CDD | GT1_Gtf-like | 696 | 804 | IPR002213 | GO:0008194(InterPro) | |
| Clacu04g1007 | 868 | Gene3D | Glycogen Phosphorylase B; | 692 | 717 | - | - | |
| Clacu04g1007 | 868 | Gene3D | Glycogen Phosphorylase B; | 601 | 691 | - | - | |
| Clacu04g1007 | 868 | PRINTS | P450 superfamily signature | 484 | 493 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | PRINTS | P450 superfamily signature | 493 | 504 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | PRINTS | P450 superfamily signature | 405 | 416 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | PRINTS | P450 superfamily signature | 353 | 370 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | ProSitePatterns | UDP-glycosyltransferases signature. | 752 | 795 | IPR035595 | - | |
| Clacu04g1007 | 868 | SUPERFAMILY | Cytochrome P450 | 100 | 545 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | Coils | Coil | 840 | 860 | - | - | |
| Clacu04g1007 | 868 | Pfam | UDP-glucoronosyl and UDP-glucosyl transferase | 748 | 803 | IPR002213 | GO:0008194(InterPro) | |
| Clacu04g1007 | 868 | Gene3D | Cytochrome P450 | 90 | 560 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1007 | 868 | MobiDBLite | consensus disorder prediction | 23 | 58 | - | - | |
| Clacu04g1007 | 868 | Pfam | Cytochrome P450 | 107 | 528 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu04g1007 | Clacu-Chr4:24295185 | Clacu07g1099 | Clacu-Chr7:25527443 | 8.30E-108 | dispersed | |
| Clacu04g1006 | Clacu-Chr4:24289146 | Clacu04g1007 | Clacu-Chr4:24295185 | 4.50E-58 | tandem | |
| Clacu10g0803 | Clacu-Chr10:13432172 | Clacu04g1007 | Clacu-Chr4:24295185 | 7.30E-130 | transposed | |
| Clacu03g0313 | Clacu-Chr3:3652294 | Clacu04g1007 | Clacu-Chr4:24295185 | 1.60E-21 | wgd | |
| Clacu04g1007 | Clacu-Chr4:24295185 | Clacu08g1646 | Clacu-Chr8:26215904 | 1.30E-14 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu04g1007 | K09837 | - | csv:101204961 | 1037.71 |