Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1031 ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAGGTTGGAACGGGAACTTCCACTTCCTTTTACGACTCAATAGCAGCTGGCGGAAACGTTTACAAGGGGAGAACCGATAGAGTTTTTGATTGGGACGGGAGTGGTGATCACAGGTTAAACACGCAAGCGAATCGGATAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCGCCGACGCTCTCAAACGCTGCAGCAAATGAGATCAATGCATTGGGATATATCAACGACGATGAATTCAGAGTGAAAACTTTGGCAAGTGGAGGTTCGTCAGGAAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAATTGCAGCAGGCTTTGGCTCTCAGGCTTTCTTCAGAGGCTACTTGTGCCGATGATCCCAACTTTATGGATCCGATGCCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGCTGAGGCCACCTCGCATCGATTCTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGGATGGACCCCTATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGCCGTATACCATCATTTGAATCTCTGAAGACAGTTGATTCCAGTGCTGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATCATATTTCTTCTAGTTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCGGTTTCTGAGGGAGAAGATGACTTGGTTTCTTCCTGGAGGGAATGCAGTGATGACTTAAAAGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGTTAGCTGATTCTATAGATTTGCCCTGTCGAATTGCTAGGGGCTGTAAATATTGCACTAGAGACGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGGGAAGGATGCTGCGTTCTCTGTCTATCAAAGGCCATTAAATAGGAAGGATGGGGATGGAAAAAACATAGTGCTTACTGGTGACAGGGACAGAAGTTCTCAGTTATTGAATCCAAAATCTGCCCAACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTATTACTTCTCAATCTACTATACAGTCTACCCCTTTTGTAGACAACGTAGTCCCTTTAAACCATATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGCATTGTCTCATGTAAGGGTGGATCATGCTAACAATTTATCATTTATTGACGGTAGTCAACTGATTAGAAAACCAAATGAGCTTTCCTTTGGCATAGAAGATTTGGTTATTCCATGGAAAGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCACGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACACCCGAACATTGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTCACAGAATACTTATCAAGGGGTAGTTTGCACAGGCTTTTGCATAGGCCTGGGGCAAGAGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGCAACCCCCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTAGTTGATAAGAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGTTTAAAGGCACACACGTTTCTTTCGTCAAAATCAGCTGCCGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCGGATGTTTATAGCTTTGGTGTGATTCTGTGGGAGCTTGCTACGTTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTAGGTTTCAAAGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTTGCTACTATTATAGAGGCTTGCTTTGCCAGTGAGCCCTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACGCCTCATCAAATTCGCTCAAACATGAAAGCTTGCAATCTTGAACAACTAGACTATAGTCTTCTTTCCAGAATGCAAGCTTCTACTTCCATCCTGAAAGATTCATTCATGTATATTAATTTCTTCGCTGAAAGTGCCTCCATTTTTGAGGTAAACCAAGGAACTGCCTTCAGTTTTGTTGACGCCCATGTTTTCTCTTTACCACCAAATATACGGTCAAAGTTTTGGGCCGATAGATTTGGTCAGTGCAAATTGTTAGGTAGTCTTGCTAGCATCATCACCCAAGGTCCAAGTTCTCTCATTCTCAAATTACAACTCGAAATTACAAATTTATTGTTGTCACATGAAGGCCAGTTGCTCCCCCTCTCCAACTTTTGGCATCAACATGTGGCGTTGAGAAGAGAACATTTTGGTCATAATTTGGATACCGCACAAAATATGAGTAAGAGAGATGAGAATAGGAAGCAAGATGGAGATGACTTTGATCAAGACCGCCAGTCACAGAGAGCTCGAAATTAA 3030 42.9 MEMPGRRSDYSLLSQIPDEEVGTGTSTSFYDSIAAGGNVYKGRTDRVFDWDGSGDHRLNTQANRIGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALGYINDDEFRVKTLASGGSSGKSWAQQTEESYQLQQALALRLSSEATCADDPNFMDPMPDEAALRSLSSSAEATSHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSAGSSIEVVLIDRHSDASLKELQNRVHHISSSCITTKEVADHLAKLVCNHLGGSVSEGEDDLVSSWRECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSGKDAAFSVYQRPLNRKDGDGKNIVLTGDRDRSSQLLNPKSAQLNTQDGKSEQFRSCITSQSTIQSTPFVDNVVPLNHISQIGSRDSEPLLALSHVRVDHANNLSFIDGSQLIRKPNELSFGIEDLVIPWKDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQIRSNMKACNLEQLDYSLLSRMQASTSILKDSFMYINFFAESASIFEVNQGTAFSFVDAHVFSLPPNIRSKFWADRFGQCKLLGSLASIITQGPSSLILKLQLEITNLLLSHEGQLLPLSNFWHQHVALRREHFGHNLDTAQNMSKRDENRKQDGDDFDQDRQSQRARN 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24581566 24590358 + ClG42_04g0103100.10 Clacu04g1031 247428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1031 1009 SUPERFAMILY Protein kinase-like (PK-like) 554 830 IPR011009 -
Clacu04g1031 1009 FunFam Serine/threonine-protein kinase isoform 1 567 654 - -
Clacu04g1031 1009 Gene3D Phosphorylase Kinase; domain 1 569 654 - -
Clacu04g1031 1009 PRINTS Tyrosine kinase catalytic domain signature 801 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 PRINTS Tyrosine kinase catalytic domain signature 650 663 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 PRINTS Tyrosine kinase catalytic domain signature 691 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 PRINTS Tyrosine kinase catalytic domain signature 738 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 PRINTS Tyrosine kinase catalytic domain signature 757 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 FunFam Serine/threonine-protein kinase CTR1 655 840 - -
Clacu04g1031 1009 ProSiteProfiles Protein kinase domain profile. 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 SMART serkin_6 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 MobiDBLite consensus disorder prediction 981 1009 - -
Clacu04g1031 1009 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Clacu04g1031 1009 Gene3D Transferase(Phosphotransferase) domain 1 655 844 - -
Clacu04g1031 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524(InterPro)
Clacu04g1031 1009 PANTHER SERINE-THREONINE PROTEIN KINASE 170 833 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu04g1031 1009 Pfam Protein tyrosine and serine/threonine kinase 577 830 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1031 1009 CDD STKc_MAP3K-like 582 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1031 Clacu-Chr4:24581566 Clacu10g0039 Clacu-Chr10:798985 8.30E-59 dispersed
Clacu02g1823 Clacu-Chr2:31722375 Clacu04g1031 Clacu-Chr4:24581566 6.30E-69 transposed
Clacu03g1669 Clacu-Chr3:30410033 Clacu04g1031 Clacu-Chr4:24581566 1.10E-124 transposed
Clacu04g1122 Clacu-Chr4:25482086 Clacu04g1031 Clacu-Chr4:24581566 1.50E-118 transposed
Clacu05g1719 Clacu-Chr5:26043998 Clacu04g1031 Clacu-Chr4:24581566 1.40E-40 transposed
Clacu05g1942 Clacu-Chr5:28609555 Clacu04g1031 Clacu-Chr4:24581566 1.90E-116 transposed
Clacu06g0436 Clacu-Chr6:5164030 Clacu04g1031 Clacu-Chr4:24581566 5.00E-91 transposed
Clacu11g1648 Clacu-Chr11:27621285 Clacu04g1031 Clacu-Chr4:24581566 3.80E-173 transposed
Clacu10g1916 Clacu-Chr10:32788825 Clacu04g1031 Clacu-Chr4:24581566 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73508 PF07714 PK_Tyr_Ser-Thr 5.70E-69 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1031 K14510 - csv:101208800 1563.13