Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1033 ATGTTTTTCTCCAAAACCAAATCTCTTAATTCTACACCAAACCCTCCTCGTTACCGAGGTGTCCGCCGTCGGAGCTCCGGCAAGTGGGTTTCAGAGATTCGGGAGCCCAGGAAGCCTAATAGGATTTGGTTGGGAACTTTCCCTACCCCGGAAATGGCTGCCATCGCTTATGACGTGGCAGCCCTGGCTGTCAAGGGCCCCAACGCTGACCTCAACTTTCCTAATTTGGCATCTTCCTTACCAGTGCCGGCCTCCACCGCCGCACGTGATATTCAGGCTGCAGCCACGTCTGCTGCAACAGCTATAGGAGCAGCTGCAGCTACAATAGGGTTAGATGGTAATCCTGCGAATGGGAGTACTAGAGAAAAAGAAGATGAGGAAGGAGATGAAGGAGAGGAATTAGTAGAGGGGGGATTTGTAGATGAAGATATGATATTTGATATGCCAAATATTCTTATGAATATGGCTGAAGGAATGCTTCTCACTCCTCCATCCTTCAACTTCAACATCAATGCTCCAAATGATTATGAATATCCTCCAACCTATACTCAAGATAACCTTTGGGAATTCCCTTAA 576 47.4 MFFSKTKSLNSTPNPPRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALAVKGPNADLNFPNLASSLPVPASTAARDIQAAATSAATAIGAAAATIGLDGNPANGSTREKEDEEGDEGEELVEGGFVDEDMIFDMPNILMNMAEGMLLTPPSFNFNINAPNDYEYPPTYTQDNLWEFP 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24602861 24603436 - ClG42_04g0103300.10 Clacu04g1033 247430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1033 191 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g1033 191 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g1033 191 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g1033 191 MobiDBLite consensus disorder prediction 1 31 - -
Clacu04g1033 191 MobiDBLite consensus disorder prediction 1 15 - -
Clacu04g1033 191 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Clacu04g1033 191 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g1033 191 SMART rav1_2 17 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g1033 191 MobiDBLite consensus disorder prediction 111 135 - -
Clacu04g1033 191 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677(InterPro)
Clacu04g1033 191 Pfam AP2 domain 16 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g1033 191 CDD AP2 16 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g1033 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 153 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1033 Clacu-Chr4:24602861 Clacu10g1905 Clacu-Chr10:32703394 2.70E-43 dispersed
Clacu10g1904 Clacu-Chr10:32694403 Clacu04g1033 Clacu-Chr4:24602861 4.90E-27 wgd
Clacu04g1033 Clacu-Chr4:24602861 Clacu08g1628 Clacu-Chr8:26057195 3.80E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47527 PF00847 AP2 1.40E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1033 - - - 0.0