Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1038 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATAAAACCTGTTCAAAGTAAGGCAGGATCTCGTCATTCAGATTTTGTATCAGACAAAGATCGAAGACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTCGAGGTAAATGCACTGAGAAAAAGTACACTTAAGAAGCCAATAACTGTTGGCATACCTCGGTCACCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCCTTTCAAAGGCGTCTGAAATGGCTGCTATGAAGAGATCATCAAAATCATCCAGCTCTTCAAGAATCTCAGAAGCTGGGCGGATCAAGACATTGTATAATTCAGTTATGGTTGAAGCCACTGAGTCAGGCTCTTCTTCAGATAAGGGGGGACGTGTGGTTGAAATTTCCCTGGTTCCAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTGAGCATGTCCAGGCATCTGCTGTTAAATCACTGGTTGAAAGTGCTCATTCTTCTCAGTTGCCCGCTGCGAAAACAAAAAAAAATGTTGAGGTTGTTACTGTGGAACAAAACGTCAATCCCACTTTGTCAAGGAAAGTTGGATCTCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAAGAGTCCATTACTCCACCATCTATATCTTCTTGCACTATTGGCAAGGTCTTAGAGAAGGAGAAGAAAATTCTTGCCGGAAGCAGGGTAGCAAATAAAGTGGCATCATCTAAGGCAGGACGGAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGCAATAAGGTAACCAAGTTATCTAGAAGTGCCTCCCGTTCTGTTAAACCAGTTATTAGAAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGGTGATACGGATCCTAGTAAAAGGAAGTTGATATGTGAGAGGTGCCACTGTGCAATGAATAGTGCAGCTAAAGACTCAAAGAAGGGCGCTGCATCCCAGTTTAGTGGTCTTTGTCCTGATGTAAACATGACCAATTCAAAATCTGGTGTTAACAAATCAGGCTTCAATGTGGATGGCAAGGCTTCTGATGTTAAAGTAAAAAGAAATACAAGGGTGCGGGATAAGGGTGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGAGTACAGTAGCAGTACGACGAGTATTATAAGTGACGATAGCAATGGGCACGGACCCAGTAATGGTAACAGACCTCATATGTCAAAAGATGTTAGGTGGGAAGCCATACGCCATGCACAATTGCAGTATGGGGTCCTCAGCTTGCGGCATTTTAATCTTTTAAAGAAGCTTGGTTGTGGGGACATTGGAACAGTGTATCTTGCTGAGCTAACCGGCACTAATTGCCTCTTTGCCATTAAGGTCATGGATAATGAGTTTCTAGCAAGACGGAAGAAAATGCCTAGAGCACAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCTACACTTTATGTTCAATTTACTTCAGATAATCTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTCCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACGGTCAATCCAACACTCTTGAAGTCATCATCCTTCAATGCGGACTTGGTGAAAACATCAGGTCCCTGTACAGATTCTAGTTGTGCTGAGCCATTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTCTACCTGCTGCTGCCAAAACAAGGAAGTCAAAACTTGACCTCACAACACAGTTCAGGTCATTGCCCCAGCTCGTTGCTGAACCCACCGATGCACGTTCGAATTCCTTTGTTGGCACTCATGAGTATTTGGCTCCCGAGATCATTAAAGGAGAGGGACATGGAGCTGCAGTTGATTGGTGGACGTTTGGTGTTTTTCTCTATGAGCTTCTGTATGGTAAAACCCCTTTCAAGGGTTCCAATAATGAAGAAACATTAGCCAATGTAATAATGCAGGGCCTCAGTTTTCCCGACAGCCCAATTGTTAGTTTCCAAGCGAGGGATCTTATCCGAGGACTGTTGGTAAAAGAACCCGAACACCGATTCGGGACAGAGAAAGGGGCTGCAGAGATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGGTGTGCAGTTCCTCCAGAACTTCCAGACTTATGTGATATGGACATTACAAGTATGATTGCTCAACAAAACAAGTTCAGGAATTTTGGCTTTGATACCTTCAACTTCCATGAAGGGTATCAAGAAATTTTCCAGACAAAAATGCCCAAGATTAAGACGAACCGTGTCAAGTATCCGGAGGGATGGGAGCTAATTGAACCAACTCTCCGAGAATTGCAAGCTAAGATGAGAGAAGCCGAGAATGACCCACATGATGGTAAGAGAAAATGTGAGACTTTGTGGCCTATATTCAAAATAGCCCATCAGAAAAGCCGCTATATATTTGACCTTTATCATCGAAGGAAGGAAATATCTAAGGAATTATTTGAATTCTGCTTGGATCAAGGCTATGCAGATCGTAACTTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTTTGTGCTGTCTAAGATGCATGCAACCCCGAGATCACAACTTTGCGACAACATGTGTGTGCCGGGTTCCCAAGCACCTGAGGGAGGAGAAGGTTATCGAGTGTGTGCATTGTGGTTGCAGGGGTTGCGCTAGTGGAGATTGA 3045 43.28 MGSGTCEIVEAREEIKPVQSKAGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAAMKRSSKSSSSSRISEAGRIKTLYNSVMVEATESGSSSDKGGRVVEISLVPEEKKLNFEKRLEHVQASAVKSLVESAHSSQLPAAKTKKNVEVVTVEQNVNPTLSRKVGSQTLKAELEKEEESITPPSISSCTIGKVLEKEKKILAGSRVANKVASSKAGRKGRLQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNGDTDPSKRKLICERCHCAMNSAAKDSKKGAASQFSGLCPDVNMTNSKSGVNKSGFNVDGKASDVKVKRNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGPSNGNRPHMSKDVRWEAIRHAQLQYGVLSLRHFNLLKKLGCGDIGTVYLAELTGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNADLVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKLDLTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGSNNEETLANVIMQGLSFPDSPIVSFQARDLIRGLLVKEPEHRFGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPDLCDMDITSMIAQQNKFRNFGFDTFNFHEGYQEIFQTKMPKIKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYHRRKEISKELFEFCLDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFATTCVCRVPKHLREEKVIECVHCGCRGCASGD 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24662095 24669083 - ClG42_04g0103800.10 Clacu04g1038 247435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1038 1014 MobiDBLite consensus disorder prediction 283 311 - -
Clacu04g1038 1014 MobiDBLite consensus disorder prediction 271 336 - -
Clacu04g1038 1014 FunFam serine/threonine-protein kinase D6PK-like 565 632 - -
Clacu04g1038 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1038 1014 SUPERFAMILY Protein kinase-like (PK-like) 456 831 IPR011009 -
Clacu04g1038 1014 ProSitePatterns G10 protein signature 1. 969 991 IPR018230 GO:0005634(InterPro)
Clacu04g1038 1014 Gene3D Transferase(Phosphotransferase) domain 1 707 832 - -
Clacu04g1038 1014 CDD STKc_phototropin_like 479 835 - -
Clacu04g1038 1014 ProSiteProfiles Protein kinase domain profile. 481 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1038 1014 FunFam Serine/threonine-protein kinase D6PK-like 479 564 - -
Clacu04g1038 1014 MobiDBLite consensus disorder prediction 422 452 - -
Clacu04g1038 1014 ProSitePatterns G10 protein signature 2. 1002 1011 IPR018230 GO:0005634(InterPro)
Clacu04g1038 1014 MobiDBLite consensus disorder prediction 404 421 - -
Clacu04g1038 1014 Gene3D Transferase(Phosphotransferase) domain 1 561 630 - -
Clacu04g1038 1014 PRINTS G10 protein signature 916 939 IPR001748 GO:0005634(InterPro)
Clacu04g1038 1014 PRINTS G10 protein signature 1002 1011 IPR001748 GO:0005634(InterPro)
Clacu04g1038 1014 PRINTS G10 protein signature 881 901 IPR001748 GO:0005634(InterPro)
Clacu04g1038 1014 PRINTS G10 protein signature 940 965 IPR001748 GO:0005634(InterPro)
Clacu04g1038 1014 PRINTS G10 protein signature 966 991 IPR001748 GO:0005634(InterPro)
Clacu04g1038 1014 SMART serkin_6 481 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1038 1014 Pfam Protein kinase domain 482 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1038 1014 Pfam Protein kinase domain 711 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1038 1014 Pfam Pre-mRNA-splicing factor BUD31 870 1012 IPR001748 GO:0005634(InterPro)
Clacu04g1038 1014 Gene3D Phosphorylase Kinase; domain 1 479 560 - -
Clacu04g1038 1014 PANTHER FLIPPASE KINASE 1-RELATED 302 841 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu04g1038 1014 FunFam serine/threonine-protein kinase D6PK-like 709 832 - -
Clacu04g1038 1014 MobiDBLite consensus disorder prediction 391 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1038 Clacu-Chr4:24662095 Clacu05g0012 Clacu-Chr5:330238 1.60E-147 dispersed
Clacu01g1305 Clacu-Chr1:23475640 Clacu04g1038 Clacu-Chr4:24662095 1.60E-77 transposed
Clacu09g0847 Clacu-Chr9:7872016 Clacu04g1038 Clacu-Chr4:24662095 6.70E-58 transposed
Clacu02g2251 Clacu-Chr2:35616986 Clacu04g1038 Clacu-Chr4:24662095 4.20E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73509 PF00069 Pkinase 7.50E-36 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1038 - - - 0.0