Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1044 ATGGGAGACTTGCCCGGCGGATCTCTGTCGTCCACGCTGGCGGATGACCACCACAACCTGCTTTTGGACGCCATTGGAGATGAAAAGATAGCGAGAGAGTCCAAAATCTACAGCTATGGAAAGAGCTTCAATGGGTTCGCCGCAAGACTTTTGCCTCACGAAGCCACCAAGCTGTCAAATGAGGAGGGTGTGGTTTCGGTATTTCGTAGCAGAAAGCAAAGAGTAGTGACGACAAGATCCTGGGACTTTTTGGGATTAGATCATCATTATTCCAAACGTAAACCTAAAATTGAGTCTAATCTCATTGTCGCCGTTTTGGATACAGGGATTTGGATTGACAGTCCTAGTTTCAACGATGAAGGCTATGGCCCACCACCCTCTAAATGGAAGGGCAAATGCGTCACTGGTCCCAACTTCACAGCCTGCAACAACAAAGTAATCGGTGCGAATTACTTCGATCTGGAAAACGTAAGCCAATATCCAGAGTCGAGCGTGGCGGACACGGAGGGCCACGGCTCTCACACGGCGTCCACGGTGGCAGGTTCGGCCGTGGAGGGGGCGAGCTTGTACGGCCTGGCCAAAGGGACGGCGCGCGGCGGCGTGCCTTCAGCTCGAATTGCAGTCTACAAAGTGTGTTGGAGCATTTTCTGCAGCGAAATGGACGTTCTTGCTGGCTTCGATGAGGCAATCGCCGATGGCGTCGATTTGATTTCCGTCTCCATAGGGTCGCCGCCGATGGATTTCTTCAGGGACAGCCAAGCAATTGGGGCTTTTCATGCCATGAAGAAGGGAATTTTGACGTCCTGCGCCGCCGGCAACGACGGCCCTGAATTGTCCACCGTCGAGAATGTGGCGCCCTGGATTATGACCGTCGCTGCTACGGCCATTGATAGACGGTTCGTCACCGCTTTCAAACTCGGTAATGGCAACAAATTTACTGGACGTTCCATCAACACCTTCTCGCCAGAGAAAGAAATGTACTCTCTTACAAGCGGAGCCAAAGCGTCCAACAATGGCACACCCTATCAAGGAAATGCAAGTGCTTGTGATCCAGAAGCTATAAGCCAAAGCAAAGTGAAGGGAAAGATTGTATATTGCTTGAAAACTTACACAGACCCCTACATCAAATCCTTAGGAGGCACTGGAGTCATTCAACTCACTCGACAACAAGCTGATTATTCCTCCATTTTGCTTCTTCCTGGGGTTACCATCCCCTCACTCTCTGGCAAATACATTGATCTTTATATCAACTCCACCAAGAATCCTAAAGCTGTCATTTATAAGAGTAAAACTGTCAGAATTGATGCTCCCTTTGTTGCTTCTTTCTCATCTAGAGGGCCTCAGTTTATCAGTAGTAACATTCTCAAGCCTGATCTTTCTGCACCAGGGATAGAAATCTTGGCTGCTTATACAAAACTAGCGAGTTTGACAGGGGATATGTCAGACAGTAGATATAGTTTATTCACTGTAATGTCAGGTACATCCATGGCCTGTCCTCATGCCACGGCGGCGGCTGCATATGTTAAGTCATTCCACCCCGACTGGTCTCCGGCTGCGGTCAAGTCTGCTCTCATGACCACTGCAACTCCAATGAAGATCAAATCCAAGGACGCTGTACTTGGCTCTGGAGCAGGACAAATAAATCCAACCAAGGCAGTGCATCCCGGCCTTATTTACAACATTTCGTTCAACTCCTACATCTCTTTCCTCTGCAAAGAAGGCTACAACAGCACAACAATCGGCCTACTTGATGGTAACAAGAAGCACAACTGCTCCAAGATCAAGCCTGCACAAGGAACCGATGGTCTCAACTACCCTACAATGCACAAACAGCTCTCAGATCCTGGTTCAGCCATCAAGGCGGTCTTTTATCGAACAGTGACTCATGTTGGGTATGGTCCATCATTGTACAGGGCAAATATATCATCTCCAGATGGCCTATCTGTCAAAGTTTTTCCAGACACCCTAAATTTTGTTAAGTTACATGAAACGAAAACATTTAAAGTTGTGGTGAAGGGAAAACCTATGCCAGAAGGAATATGGATTCGATCAGCTTTACTTGAATGGAACGACTCTAAACACATAGTTAGAAGCAATATCCTTATCTACAGGAAATTGATCTAA 2124 47.6 MGDLPGGSLSSTLADDHHNLLLDAIGDEKIARESKIYSYGKSFNGFAARLLPHEATKLSNEEGVVSVFRSRKQRVVTTRSWDFLGLDHHYSKRKPKIESNLIVAVLDTGIWIDSPSFNDEGYGPPPSKWKGKCVTGPNFTACNNKVIGANYFDLENVSQYPESSVADTEGHGSHTASTVAGSAVEGASLYGLAKGTARGGVPSARIAVYKVCWSIFCSEMDVLAGFDEAIADGVDLISVSIGSPPMDFFRDSQAIGAFHAMKKGILTSCAAGNDGPELSTVENVAPWIMTVAATAIDRRFVTAFKLGNGNKFTGRSINTFSPEKEMYSLTSGAKASNNGTPYQGNASACDPEAISQSKVKGKIVYCLKTYTDPYIKSLGGTGVIQLTRQQADYSSILLLPGVTIPSLSGKYIDLYINSTKNPKAVIYKSKTVRIDAPFVASFSSRGPQFISSNILKPDLSAPGIEILAAYTKLASLTGDMSDSRYSLFTVMSGTSMACPHATAAAAYVKSFHPDWSPAAVKSALMTTATPMKIKSKDAVLGSGAGQINPTKAVHPGLIYNISFNSYISFLCKEGYNSTTIGLLDGNKKHNCSKIKPAQGTDGLNYPTMHKQLSDPGSAIKAVFYRTVTHVGYGPSLYRANISSPDGLSVKVFPDTLNFVKLHETKTFKVVVKGKPMPEGIWIRSALLEWNDSKHIVRSNILIYRKLI 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24698111 24702335 - ClG42_04g0104400.10 Clacu04g1044 247441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1044 707 Gene3D - 297 432 - -
Clacu04g1044 707 SUPERFAMILY Subtilisin-like 91 553 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu04g1044 707 PRINTS Subtilisin serine protease family (S8) signature 167 180 IPR015500 -
Clacu04g1044 707 PRINTS Subtilisin serine protease family (S8) signature 98 117 IPR015500 -
Clacu04g1044 707 PRINTS Subtilisin serine protease family (S8) signature 492 508 IPR015500 -
Clacu04g1044 707 CDD PA_subtilisin_like 304 426 - -
Clacu04g1044 707 CDD Peptidases_S8_3 77 529 IPR034197 -
Clacu04g1044 707 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 75 IPR037045 -
Clacu04g1044 707 Pfam Fibronectin type-III domain 603 702 IPR041469 -
Clacu04g1044 707 Gene3D - 570 705 - -
Clacu04g1044 707 Gene3D Peptidase S8/S53 domain 101 566 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu04g1044 707 Pfam Peptidase inhibitor I9 14 72 IPR010259 -
Clacu04g1044 707 ProSiteProfiles Serine proteases, subtilase domain profile. 80 553 - -
Clacu04g1044 707 ProSitePatterns Serine proteases, subtilase family, serine active site. 493 503 IPR023828 -
Clacu04g1044 707 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 699 IPR045051 -
Clacu04g1044 707 Pfam Subtilase family 99 542 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu04g1044 707 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 103 113 IPR023827 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1044 Clacu-Chr4:24698111 Clacu07g0650 Clacu-Chr7:11589707 2.40E-190 dispersed
Clacu01g0097 Clacu-Chr1:906500 Clacu04g1044 Clacu-Chr4:24698111 2.30E-166 transposed
Clacu05g2376 Clacu-Chr5:32108200 Clacu04g1044 Clacu-Chr4:24698111 8.50E-162 transposed
Clacu10g1893 Clacu-Chr10:32514731 Clacu04g1044 Clacu-Chr4:24698111 1.80E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1044 - - - 0.0