Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1050 ATGGCGGAAGAGCACAGATGCCAAGCACATGAAGGCCATCGTCTCTGCGCTAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCCGTTCCCCCTGTTGTCGAATTGTCCCTGCCGGACTCCACCACAGATCTGACCATCCCTCCCCTCGCGGCCGTCGGATCTGAAGCCGCAAATCAACCGAATCCTACTCCGAACCCGAACCCCAACCCAAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA 537 54.75 MAEEHRCQAHEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPVPPVVELSLPDSTTDLTIPPLAAVGSEAANQPNPTPNPNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24761200 24761736 + ClG42_04g0105000.10 Clacu04g1050 247447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1050 178 Gene3D - 96 174 IPR035896 -
Clacu04g1050 178 SUPERFAMILY AN1-like Zinc finger 102 173 IPR035896 -
Clacu04g1050 178 MobiDBLite consensus disorder prediction 48 65 - -
Clacu04g1050 178 MobiDBLite consensus disorder prediction 47 118 - -
Clacu04g1050 178 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 178 IPR050652 -
Clacu04g1050 178 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Clacu04g1050 178 MobiDBLite consensus disorder prediction 66 80 - -
Clacu04g1050 178 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Clacu04g1050 178 Gene3D - 1 69 - -
Clacu04g1050 178 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Clacu04g1050 178 ProSiteProfiles Zinc finger AN1-type profile. 113 159 IPR000058 GO:0008270(InterPro)
Clacu04g1050 178 FunFam Zinc finger AN1-type containing 6 96 174 - -
Clacu04g1050 178 SMART AN1_Zf_4 119 156 IPR000058 GO:0008270(InterPro)
Clacu04g1050 178 Pfam AN1-like Zinc finger 119 155 IPR000058 GO:0008270(InterPro)
Clacu04g1050 178 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2270 Clacu-Chr2:35801228 Clacu04g1050 Clacu-Chr4:24761200 3.40E-39 dispersed
Clacu04g1050 Clacu-Chr4:24761200 Clacu09g0428 Clacu-Chr9:3745354 2.80E-26 dispersed
Clacu04g1050 Clacu-Chr4:24761200 Clacu01g0354 Clacu-Chr1:3521901 2.90E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1050 - - - 0.0