Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g1050 | ATGGCGGAAGAGCACAGATGCCAAGCACATGAAGGCCATCGTCTCTGCGCTAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCCGTTCCCCCTGTTGTCGAATTGTCCCTGCCGGACTCCACCACAGATCTGACCATCCCTCCCCTCGCGGCCGTCGGATCTGAAGCCGCAAATCAACCGAATCCTACTCCGAACCCGAACCCCAACCCAAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA | 537 | 54.75 | MAEEHRCQAHEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPVPPVVELSLPDSTTDLTIPPLAAVGSEAANQPNPTPNPNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24761200 | 24761736 | + | ClG42_04g0105000.10 | Clacu04g1050 | 247447 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g1050 | 178 | Gene3D | - | 96 | 174 | IPR035896 | - | |
Clacu04g1050 | 178 | SUPERFAMILY | AN1-like Zinc finger | 102 | 173 | IPR035896 | - | |
Clacu04g1050 | 178 | MobiDBLite | consensus disorder prediction | 48 | 65 | - | - | |
Clacu04g1050 | 178 | MobiDBLite | consensus disorder prediction | 47 | 118 | - | - | |
Clacu04g1050 | 178 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 13 | 178 | IPR050652 | - | |
Clacu04g1050 | 178 | ProSiteProfiles | Zinc finger A20-type profile. | 10 | 44 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Clacu04g1050 | 178 | MobiDBLite | consensus disorder prediction | 66 | 80 | - | - | |
Clacu04g1050 | 178 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 15 | 58 | - | - | |
Clacu04g1050 | 178 | Gene3D | - | 1 | 69 | - | - | |
Clacu04g1050 | 178 | SMART | A20_3 | 13 | 37 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Clacu04g1050 | 178 | ProSiteProfiles | Zinc finger AN1-type profile. | 113 | 159 | IPR000058 | GO:0008270(InterPro) | |
Clacu04g1050 | 178 | FunFam | Zinc finger AN1-type containing 6 | 96 | 174 | - | - | |
Clacu04g1050 | 178 | SMART | AN1_Zf_4 | 119 | 156 | IPR000058 | GO:0008270(InterPro) | |
Clacu04g1050 | 178 | Pfam | AN1-like Zinc finger | 119 | 155 | IPR000058 | GO:0008270(InterPro) | |
Clacu04g1050 | 178 | Pfam | A20-like zinc finger | 14 | 37 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2270 | Clacu-Chr2:35801228 | Clacu04g1050 | Clacu-Chr4:24761200 | 3.40E-39 | dispersed | |
Clacu04g1050 | Clacu-Chr4:24761200 | Clacu09g0428 | Clacu-Chr9:3745354 | 2.80E-26 | dispersed | |
Clacu04g1050 | Clacu-Chr4:24761200 | Clacu01g0354 | Clacu-Chr1:3521901 | 2.90E-39 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g1050 | - | - | - | 0.0 |