Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1090 ATGCGTGGCGCCTCTCGAGCTCCGAACCGGTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCCTTCGCTCCTCCGGGTCATTATTACCACTTCGGCGGCGGTTCCTCCAATGCTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATCTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATACTGGAAAGGTTTCAATCAACAAATTCCAGGAAATGTGGATAGCGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTGACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACCTTGGAAGTTCCTGATCCTGATGAAGCTGTAGATTATCCACAGAGAAGATACCGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTTCCGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATCGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCCAATGAGTTTCCTGTTGGAATGATGAAGATTATTCCTTCAGATGTCGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACCGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCTCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATAATACAATTGCGAGCGCTAGTCGGGCGGGGAGTGCAGAGGAAATAGAAACAAACTTTGGTAAGGTTGCAGATGGGAAGAAGCATGTAAGATAG 1482 43.32 MRGASRAPNRSEPLPQSQTAQILPPLKRHLAFDSAKPPFAPPGHYYHFGGGSSNAIDQQPDSIVVKPLKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPVGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPSDNTIASASRAGSAEEIETNFGKVADGKKHVR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25111008 25117988 - ClG42_04g0109000.10 Clacu04g1090 247487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1090 493 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu04g1090 493 SUPERFAMILY Winged helix DNA-binding domain 142 205 IPR036390 -
Clacu04g1090 493 PANTHER TRANSCRIPTION FACTOR E2F 59 422 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Clacu04g1090 493 MobiDBLite consensus disorder prediction 1 38 - -
Clacu04g1090 493 Coils Coil 234 254 - -
Clacu04g1090 493 Gene3D - 214 324 - -
Clacu04g1090 493 MobiDBLite consensus disorder prediction 83 137 - -
Clacu04g1090 493 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983(InterPro)
Clacu04g1090 493 SUPERFAMILY E2F-DP heterodimerization region 221 324 IPR037241 -
Clacu04g1090 493 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu04g1090 493 MobiDBLite consensus disorder prediction 444 493 - -
Clacu04g1090 493 MobiDBLite consensus disorder prediction 457 475 - -
Clacu04g1090 493 CDD E2F_DD 223 324 IPR032198 GO:0046983(InterPro)
Clacu04g1090 493 FunFam E2F transcription factor 1 136 209 - -
Clacu04g1090 493 Gene3D - 136 210 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1090 Clacu-Chr4:25111008 Clacu06g1773 Clacu-Chr6:28275372 1.00E-09 dispersed
Clacu02g2289 Clacu-Chr2:35927389 Clacu04g1090 Clacu-Chr4:25111008 7.70E-137 wgd
Clacu04g1090 Clacu-Chr4:25111008 Clacu08g1601 Clacu-Chr8:25789362 1.30E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47532 PF16421 E2F_CC-MB 5.20E-33 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1090 K06620 - csv:101212480 749.584